Research Activities
Bioinformatics
Virology/Bacteriology
Centers
 - UW Toxico Genomics
 - UW - NHLBI Center
 - Center for Pathway Inference Software
Recent Publications
-- Nature Genetics - Integrating large-scale functional genomic data...

-- Nature Biotechnology - Min info spec for in situ hybridization...

-- Nature Biotechnology - Direct multiplexed measurement of gene expression...

-- J Virology - Attenuation of the type I interferon response...

-- J Virology - Independent and cooperative antiviral actions of beta interferon...

-- Carcinogenesis - Comparative genomics of susceptibility to mammary carcinogenesis...

-- OMICS - What is the best reference RNA?...

-- J Virology - Human rhinovirus attenuates the type I interferon response...

-- Science - Rhesus Macaque Genome Sequencing and Analysis Consortium...

-- Cell Microbiology - Hierarchical gene expressio profiles of HUVEC...
Teaching/Training
Teaching/Training
Dr. Bumgarner is well known for his teaching efforts both locally and internationally. At the University of Washington, Dr. Bumgarner’s primary teaching responsibilities consist of an annual course "Conjoint 546 - Survey of Genome Technologies". This graduate level course is designed to expose students to a variety of technologies including methods for DNA sequencing, expression analysis, genotyping and proteomics. Each year since 2000, 20-27 students have taken this very popular course. In addition, the UW Center for Expression Arrays (CEA) offers regular training courses to explain both expression array technology and tools and methods for data analysis. To date, more than 200 researchers at the UW and other local institutions have received training via the CEA.

Each year, Dr. Bumgarner also participates in several training courses offered either in the US or at international locations. For example, in 2004, Dr. Bumgarner taught data analysis workshops at the South African National Bioinformatics Institute, an EMBO sponsored course in Heidelberg, and a FEBs sponsored course in Prague. In 2005, Dr. Bumgarner is currently scheduled to teach workshops at the Feb. 2005 AAAS meeting in Washington DC, at a June 2005 EMBO course in Heidelberg and at the Sept 2005 MGED Meeting in Bergen Norway.

In addition to courses and workshops, Dr. Bumgarner takes an active role in public education activities and regularly speaks to outside groups. For example in March of 2005, he will give a public lecture entitled "Biotechnology: Myths and Realities" at the Tacoma public library and he has taught workshops entitled "Understanding Biotechnology" at each of the Biotechnology Industry Organization Meetings in the past 4 years.

Mentoring
Dr. Bumgarner is actively involved in mentoring a number of graduate students and postdoctoral scientists. Current activities are listed below.

Current Trainees Membership on Graduate Supervisory Committee Courses taught: