Research Activities
Bioinformatics
Virology/Bacteriology
Centers
 - UW Toxico Genomics
 - UW - NHLBI Center
 - Center for Pathway Inference Software
Recent Publications
-- Nature Genetics - Integrating large-scale functional genomic data...

-- Nature Biotechnology - Min info spec for in situ hybridization...

-- Nature Biotechnology - Direct multiplexed measurement of gene expression...

-- J Virology - Attenuation of the type I interferon response...

-- J Virology - Independent and cooperative antiviral actions of beta interferon...

-- Carcinogenesis - Comparative genomics of susceptibility to mammary carcinogenesis...

-- OMICS - What is the best reference RNA?...

-- J Virology - Human rhinovirus attenuates the type I interferon response...

-- Science - Rhesus Macaque Genome Sequencing and Analysis Consortium...

-- Cell Microbiology - Hierarchical gene expressio profiles of HUVEC...
Software
Software
Download MeV with USC, TEASE, RAMA & BRIDGE
Download MeV with USC, TEASE, RAMA & BRIDGE (including source)
USC Documentation
 An integration of Ka Yee Yeung's Uncorrelated Shrunken Centroid algorithm and Annie Liu's Tree-EASE
 with TIGR's MeV (MultiExperiment Viewer)


Download USC & EWUSC
 Uncorrelated Shrunken Centroid and Error-Weighted Uncorrelated Shrunken Centroid algorithms


HVEC
 Host-Virus Expression Compendium


BMA
 Bayesian Model Averaging gene selection and classification algorithm


IMM
 Infinite Model Mixture clustering algorithm.


RAMA
 Robust Analysis of Microarrays