Amalia Annest, Roger E. Bumgarner, Adrian E. Raftery, Ka Yee Yeung

• Software:
  • Bioconductor package: iterativeBMAsurv
  • Software documentation: iterativeBMAsurv package vignette

• Gene Expression Datasets
  • Diffuse Large B-Cell Lymphoma (DLBCL)
    • Training set: n=160, test set: n=80
    • The DLBCL dataset used in this paper can be downloaded from the supplementary website of Rosenwald et al. (2002).
    • Our individual training and test set files are also directly available here:
      • Training Set
      • Test Set
      • Training Survival Times
      • Test Survival Times
      • Training Censor Information
      • Test Censor Information
  • Non-Overlapping Breast Cancer (n=234)
    • Training set: n=61, test set: n=234
    • The breast cancer dataset used in this paper is a modified version of the datasets used in van't Veer et al. (2002) and van di Vijver et al. (2002). The training and test set files are available below.
      • Training Set
      • Test Set
      • Training Survival Times
      • Test Survival Times
      • Training Censor Information
      • Test Censor Information
  • Overlapping Breast Cancer (n=295)
    • Training set: n=61, test set: n=295
    • This is the full breast cancer dataset from van di Vijver et al. (2002). 61 of the test samples overlap with the training samples (these 61 samples were removed to create the 234-sample test set above).
      • Training Set
      • Test Set
      • Training Survival Times
      • Test Survival Times
      • Training Censor Information
      • Test Censor Information
  • iterativeBMAsurv Package Sample Datasets (Subsets of the DLBCL Datasets)
    • Training Set: n=65, test set: n=36
    • This is the subset of the DLBCL data that we used for the examples in our iterativeBMAsurv package, which can be downloaded under "Other Helpful Links" below.
      • Training Set
      • Test Set
      • Training Survival Times
      • Test Survival Times
      • Training Censor Information
      • Test Censor Information

• Other Helpful Links
  • R Homepage
  • Bioconductor Homepage
  • Chris Volinsky's Bayesian Model Averaging Webpage
  • Adrian Raftery's Bayesian Model Averaging Webpage
  • Ka Yee Yeung's Research