hpar Gene Table Build 14_03_11 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) HPS-ST41
2) HPS-ST42
3) HPS9
4) HPS10
5) HPS11
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1) HPS-ST41
2) HPS-ST42
3) HPS9
4) HPS10
5) HPS11
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1) HPS-ST41
2) HPS-ST42
3) HPS9
4) HPS10
5) HPS11


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Haemophilus parasuis ST4-1

Haemophilus parasuis ST4-2

Haemophilus parasuis HPS9

Haemophilus parasuis HPS10

Haemophilus parasuis HPS11

51p-cluster000063 Uncategoriziedhypothetical protein252         
52p-cluster000064 COG1621 [G]fructosidase1437         
53p-cluster000066 COG2824 [P]hypothetical protein321         
54p-cluster000068 COG0114 [C]aspartate ammonia-lyase1428         
55p-cluster000069 COG0326 [O]heat shock protein 901887    *    
56p-cluster000072 Uncategoriziedhypothetical protein540         
57p-cluster000073 Uncategoriziedhypothetical protein321         
58p-cluster000074 COG3617 [K]hypothetical protein657         
59p-cluster000075 COG0631 [T]protein phosphatase714         
60p-cluster000076 Uncategoriziedhypothetical protein276         
61p-cluster000077 Uncategoriziedhypothetical protein642*   *    
62p-cluster000078 Uncategoriziedexonuclease615* * *    
63p-cluster000079 Uncategoriziedrecombinase867* * *    
64p-cluster000082 COG0110 [R]maltose acetyltransferase594         
65p-cluster000084 COG0789 [K]MerR family transcriptional regulat402         
66p-cluster000085 COG4125 [S]membrane protein426         
67p-cluster000087 COG0454 [KR]GNAT family acetyltransferase468         
68p-cluster000090 COG0541 [U]cell division protein FtsY1404      * *
69p-cluster000092 COG2177 [D]cell division protein FtsX927* * * * *
70p-cluster000093 COG0192 [H]S-adenosylmethionine synthetase1149*       *
71p-cluster000094 COG4121 [S]FAD-dependent cmnm(5)s(2)U34 oxidor2004        *
72p-cluster000095 COG0327 [S]metal-binding protein771        *
73p-cluster000096 COG0303 [H]molybdopterin molybdenumtransferase1233*       *
74p-cluster000098 Uncategoriziedtranscriptional regulator201         
75p-cluster000099 Uncategoriziedhypothetical protein663         
76p-cluster000100 Uncategoriziedhypothetical protein420         
77p-cluster000102 COG1314 [U]preprotein translocase subunit SecG330         
78p-cluster000103 COG0550 [L]DNA topoisomerase III1920         
79p-cluster000104 COG3770 [M]murein endopeptidase825         
80p-cluster000105 COG2933 [R]methyltransferase258         
81p-cluster000106 COG2363 [S]membrane protein399         
82p-cluster000107 COG5499 [K]transcriptional regulator363         
83p-cluster000108 COG4680 [S]toxin RelE303         
84p-cluster000109 COG2896 [H]molybdenum cofactor biosynthesis pr1020* *      
85p-cluster000110 COG1396 [K]DNA-binding protein399*   *    
86p-cluster000112 Uncategoriziedhypothetical protein318*   *    
87p-cluster000113 COG1028 [IQR]enoyl-ACP reductase789  * *    
88p-cluster000114 COG0293 [J]23S rRNA methyltransferase627  *      
89p-cluster000115 COG0464 [O]ATP-dependent metalloprotease1929         
90p-cluster000116 COG0488 [R]ABC transporter ATP-binding protein1914         
91p-cluster000118 COG0343 [J]queuine tRNA-ribosyltransferase1158* *     *
92p-cluster000119 COG0187 [L]DNA gyrase subunit B2433         
93p-cluster000120 Uncategoriziedhypothetical protein513         
94p-cluster000121 UncategoriziedSirA protein/redox protein, regulat231         
95p-cluster000122 COG3094 [S]invasion protein expression up-regu345         
96p-cluster000123 COG3028 [S]hypothetical protein534         
97p-cluster000124 COG0312 [R]protein PmbA1350         
98p-cluster000126 COG0066 [E]isopropylmalate isomerase606         
99p-cluster000127 COG0065 [E]isopropylmalate isomerase1407         
100p-cluster000128 COG0477 [GEPR]bicyclomycin/multidrug efflux syste1197         

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Gene Completeness

>=100%
=70%
<70%

: Similar sequence present
: Not present

* : Within 300 bp from ends
F : Possible frameshift
I : Island genes