fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
Show genes only present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

51p-cluster000100 Uncategoriziedtransposase317*                                            
52p-cluster000101 COG0221 [C]inorganic pyrophosphatase354* * * * *   *   * *         *           * *  
53p-cluster000103 Uncategoriziedglutaredoxin204                                             
54p-cluster000104 COG0209 [F]ribonucleoside-diphosphate reductas2268                                             
55p-cluster000106 COG0591 [ER]proline:sodium symporter PutP1449                  *                          
56p-cluster000107 Uncategoriziedhypothetical protein477                  *                          
57p-cluster000109 Uncategoriziedhypothetical protein303* *               *                          
58p-cluster000110 COG2252 [R]guanine permease1068                                             
59p-cluster000111 COG0503 [F]adenine phosphoribosyltransferase534                                             
60p-cluster000113 COG0716 [C]flavodoxin432                  *                          
61p-cluster000118 COG1947 [I]4-diphosphocytidyl-2C-methyl-D-eryt885                  *                          
62p-cluster000119 COG1188 [J]heat-shock protein Hsp15300  *   *           *       *                  
63p-cluster000120 COG1197 [LK]transcription-repair coupling facto2946  *   *           *                          
64p-cluster000123 COG3464 [L]transposase201*     * *               *                    
65p-cluster000124 Uncategoriziedhypothetical protein291                                             
66p-cluster000125 Uncategoriziedhypothetical protein357                                             
67p-cluster000126 Uncategoriziedhypothetical protein579                                             
68p-cluster000129 Uncategoriziedhypothetical protein336                                             
69p-cluster000130 UncategoriziedN-acetylmuramoyl-L-alanine amidase618                                             
70p-cluster000131 Uncategoriziedhypothetical protein810                                             
71p-cluster000132 COG0582 [L]integrase975                        *                    
72p-cluster000134 Uncategoriziedhypothetical protein1173                        *                    
73p-cluster000135 Uncategoriziedtail protein654                                             
74p-cluster000136 COG3948 [R]baseplate assembly protein1101                                             
75p-cluster000138 Uncategoriziedhypothetical protein648                                             
76p-cluster000139 Uncategoriziedphage baseplate protein531                                             
77p-cluster000140 COG3500 [R]phage late control protein1047                                             
78p-cluster000142 COG5283 [S]phage tail length tape measure prot2730                                             
79p-cluster000143 Uncategoriziedhypothetical protein390                                             
80p-cluster000145 COG3497 [R]tail protein1449                                             
81p-cluster000146 Uncategoriziedhypothetical protein333                                             
82p-cluster000147 Uncategoriziedhypothetical protein552                                             
83p-cluster000148 Uncategoriziedhypothetical protein546                                             
84p-cluster000149 Uncategoriziedhypothetical protein327                                             
85p-cluster000150 Uncategoriziedhypothetical protein237                                             
86p-cluster000151 Uncategoriziedphage capsid protein1029                                             
87p-cluster000152 Uncategoriziedhypothetical protein327                                             
88p-cluster000155 Uncategoriziedhypothetical protein411                                             
89p-cluster000157 Uncategoriziedhypothetical protein591                                             
90p-cluster000158 Uncategoriziedhypothetical protein681                                             
91p-cluster000159 COG0863 [L]chromosome partitioning protein Par1317