fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
Show genes only present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

1p-cluster027831 Uncategoriziedfusobacterium outer membrane protei11886                  *     *             *   *  
2p-cluster024170 Uncategoriziedhypothetical protein10911                                             
3p-cluster024055 Uncategoriziedhypothetical protein10803* *     *                                   *
4p-cluster042777 COG3210 [U]hypothetical protein9663* *   *         * *     *   *             *  
5p-cluster014656 Uncategoriziedhypothetical protein8583                * *     *               *   *
6p-cluster033274 COG3210 [U]hemolysin8256  * *   *   *     *         *                
7p-cluster012401 Uncategoriziedhypothetical protein7578* * *   *       * *     *   *           * * *
8p-cluster035407 UncategoriziedAT family autotransporter7368  *   *           *                       *  
9p-cluster043679 COG0827 [L]hypothetical protein6714                                    *   *   *
10p-cluster011345 Uncategoriziedhypothetical protein6699                  *     *               *   *
11p-cluster044645 Uncategoriziedhypothetical protein6231    *           * *     *   *         * * *  
12p-cluster012558 Uncategoriziedhypothetical protein5985            *                         *      
13p-cluster019648 Uncategoriziedouter membrane protein5625                  *     *                    
14p-cluster012215 Uncategoriziedhypothetical protein5178                  *                          
15p-cluster042396 COG1205 [R]hypothetical protein5157                                             
16p-cluster016451 COG5295 [UW]hypothetical protein4971    *                     * *               *
17p-cluster028417 COG5651 [N]hypothetical protein4929  *   * *                 * *                
18p-cluster008122 COG3210 [U]hemolysin4919      *     *     *                     *    
19p-cluster040228 COG2373 [R]alpha-2-macroglobulin family protei4878  *   * *                                    
20p-cluster047988 COG1112 [L]hypothetical protein4842                                            *
21p-cluster026624 COG3210 [U]hypothetical protein4818                            *           *    
22p-cluster010175 Uncategoriziedhypothetical protein4653                                             
23p-cluster047763 Uncategoriziedhypothetical protein4554                  *                          
24p-cluster003035 Uncategoriziedhypothetical protein4530                  *                          
25p-cluster050030 COG1112 [L]hypothetical protein4497                                             
26p-cluster008782 UncategoriziedUbiD family decarboxylase4476                  *       *                  
27p-cluster033108 COG0847 [L]DNA polymerase III, alpha subunit, 4365    *             *                          
28p-cluster009187 COG3210 [U]filamentous hemagglutinin4305                                             
29p-cluster009805 Uncategoriziedtail tape measure protein4296                                             
30p-cluster038693 Uncategoriziedhypothetical protein4107                                             
31p-cluster006893 COG3513 [S]CRISPR-associated protein Csn14104      * *                                    
32p-cluster034217 COG1112 [L]helicase4017                                             
33p-cluster034264 Uncategoriziedhypothetical protein3999                                             
34p-cluster001790 COG0086 [K]DNA-directed RNA polymerase subunit3960                                          *  
35p-cluster005736 COG0550 [L]DNA topoisomerase I3810                  *                          
36p-cluster000364 UncategoriziedATP:cob(I)alamin adenosyltransferas3753                  *                         *
37p-cluster015468 COG0046 [F]phosphoribosylformylglycinamidine s3750                  *       *                  
38p-cluster000361 COG1002 [V]restriction endonuclease3750