hpar Gene Table Build 14_03_11 [A quick tutorial]

Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) HPS-ST41
2) HPS-ST42
3) HPS9
4) HPS10
5) HPS11
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# Cluster ID COG Function Annotation Expected gene Length (bp)

Haemophilus parasuis ST4-1

Haemophilus parasuis ST4-2

Haemophilus parasuis HPS9

Haemophilus parasuis HPS10

Haemophilus parasuis HPS11

1p-cluster001645 COG1949 [A]oligoribonuclease552         
2p-cluster000906 COG0039 [C]malate dehydrogenase945         
3p-cluster001893 COG0045 [C]succinyl-CoA synthetase subunit bet1167         
4p-cluster001189 COG0055 [C]ATP synthase F0F1 subunit beta1374         
5p-cluster001191 COG0056 [C]ATP F0F1 synthase subunit alpha1542         
6p-cluster001894 COG0074 [C]succinyl-CoA synthetase subunit alp873         
7p-cluster000068 COG0114 [C]aspartate ammonia-lyase1428         
8p-cluster001060 COG0221 [C]inorganic pyrophosphatase528         
9p-cluster001190 COG0224 [C]ATP F0F1 synthase subunit gamma867         
10p-cluster001282 COG0240 [C]glycerol-3-phosphate dehydrogenase1011         
11p-cluster000148 COG0243 [C]hypothetical protein360         
12p-cluster000271 COG0243 [C]sulfate ABC transporter substrate-b588         
13p-cluster000272 COG0243 [C]formate dehydrogenase2433         
14p-cluster001738 COG0243 [C]nitrate reductase2484         
15p-cluster001054 COG0247 [C]glycerol-3-phosphate dehydrogenase1278         
16p-cluster001915 COG0247 [C]hypothetical protein732         
17p-cluster000518 COG0277 [C]membrane protein3093      *  
18p-cluster007547 COG0277 [C]lactate dehydrogenase1692    * * *
19p-cluster000466 COG0280 [C]phosphate acetyltransferase2136         
20p-cluster001620 COG0280 [C]malic enzyme2268         
21p-cluster000467 COG0282 [C]acetate kinase1200         
22p-cluster001740 COG0348 [C]quinol dehydrogenase870         
23p-cluster001188 COG0355 [C]ATP synthase F0F1 subunit epsilon417        *
24p-cluster001195 COG0356 [C]ATP synthase F0F1 subunit A792         
25p-cluster001420 COG0372 [C]type II citrate synthase1281         
26p-cluster000273 COG0437 [C]formate dehydrogenase927         
27p-cluster003844 COG0437 [C]hypothetical protein201         
28p-cluster000699 COG0479 [C]fumarate reductase771         
29p-cluster009302 COG0508 [C]pyruvate dehydrogenase1905         
30p-cluster001891 COG0567 [C]2-oxoglutarate dehydrogenase2808         
31p-cluster003787 COG0578 [C]glycerol-3-phosphate dehydrogenase1692         
32p-cluster006716 COG0584 [C]phosphodiesterase1137         
33p-cluster008796 COG0584 [C]hypothetical protein378         
34p-cluster000753 COG0633 [C]2Fe-2S ferredoxin342         
35p-cluster001194 COG0636 [C]ATP synthase subunit C255         
36p-cluster001193 COG0711 [C]ATP synthase subunit B471         
37p-cluster001192 COG0712 [C]ATP F0F1 synthase subunit delta534         
38p-cluster001704 COG0716 [C]flavodoxin FldA525         
39p-cluster001749 COG0716 [C]mioC444* * *    
40p-cluster000899 COG0778 [C]nitroreductase564         
41p-cluster001412 COG0778 [C]NAD(P)H nitroreductase669         
42p-cluster001583 COG0778 [C]nitroreductase639         
43p-cluster000747 COG0822 [C]scaffolding protein384         
44p-cluster000035 COG1012 [C]proline dehydrogenase3612         
45p-cluster001466 COG1012 [C]methylmalonate-semialdehyde dehydro1512         
46p-cluster000698 COG1053 [C]fumarate reductase1785        *
47p-cluster000967 COG1053 [C]fumarate reductase1578         
48p-cluster001845 COG1085 [C]galactose-1-phosphate uridylyltrans1053* * *    
49p-cluster001914 COG1139 [C]amino acid dehydrogenase1407         
50p-cluster001739 COG1145 [C]quinol dehydrogenase759         

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Gene Completeness


: Similar sequence present
: Not present

* : Within 300 bp from ends
F : Possible frameshift
I : Island genes