fnec Gene Table Build 14_03_11 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) BL
2) DJ-1
3) BFTR-1
4) DAB
5) BFTR-2
6) DJ-2
7) D12
8) ATCC51357
9) Fnf1007
Show genes only present in
1) BL
2) DJ-1
3) BFTR-1
4) DAB
5) BFTR-2
6) DJ-2
7) D12
8) ATCC51357
9) Fnf1007
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1) BL
2) DJ-1
3) BFTR-1
4) DAB
5) BFTR-2
6) DJ-2
7) D12
8) ATCC51357
9) Fnf1007


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium necrophorum BL

Fusobacterium necrophorum DJ-1

Fusobacterium necrophorum BFTR-1

Fusobacterium necrophorum DAB

Fusobacterium necrophorum BFTR-2

Fusobacterium necrophorum DJ-2

Fusobacterium necrophorum D12

Fusobacterium necrophorum subsp. funduliforme ATCC

Fusobacterium necrophorum subsp. funduliforme Fnf

1p-cluster011721 COG0022 [C]hypothetical protein975                 
2p-cluster001455 COG0039 [C]L-lactate dehydrogenase957                 
3p-cluster000210 COG0055 [C]F0F1 ATP synthase subunit alpha1506                 
4p-cluster000212 COG0055 [C]F0F1 ATP synthase subunit beta1398                 
5p-cluster002250 COG0055 [C]V-type ATP synthase subunit B1377                 
6p-cluster002251 COG0055 [C]V-type ATP synthase subunit A1779                 
7p-cluster001629 COG0114 [C]aspartate ammonia-lyase1416* * * * * *   * *
8p-cluster019251 COG0221 [C]inorganic diphosphatase-like protei333                 
9p-cluster000211 COG0224 [C]ATP synthase subunit gamma849                 
10p-cluster002029 COG0240 [C]glycerol-3-phosphate dehydrogenase1002                 
11p-cluster001544 COG0277 [C]2-hydroxy-acid oxidase1428                 
12p-cluster000105 COG0280 [C]phosphotransacetylase1014                 
13p-cluster002232 COG0281 [C]malate dehydrogenase1185                 
14p-cluster000106 COG0282 [C]acetate kinase1203                 
15p-cluster000213 COG0355 [C]ATP synthase subunit epsilon276                 
16p-cluster000206 COG0356 [C]ATP synthase subunit A807                 
17p-cluster002048 COG0426 [C]flavoprotein1215                 
18p-cluster000303 COG0427 [C]4-hydroxybutyrate CoA transferase1311                 
19p-cluster000418 COG0554 [C]glycerol kinase1500                 
20p-cluster000286 COG0584 [C]glycerophosphodiester phosphodieste1080                 
21p-cluster000423 COG0584 [C]glycerophosphoryl diester phosphodi735            *    
22p-cluster000207 COG0636 [C]F0F1 ATP synthase subunit C276                 
23p-cluster002255 COG0636 [C]V-type ATP synthase subunit K486*                
24p-cluster010156 COG0667 [C]aldo/keto reductase1107                 
25p-cluster000107 COG0674 [C]Pyruvate-flavodoxin oxidoreductase3582                 
26p-cluster000208 COG0711 [C]ATP synthase subunit B507  *              
27p-cluster000209 COG0712 [C]ATP synthase subunit delta534  *              
28p-cluster000298 COG0716 [C]flavodoxin504                 
29p-cluster000708 COG0716 [C]flavodoxin516    *   *       *
30p-cluster000944 COG0716 [C]flavodoxin600*           *    
31p-cluster001066 COG0716 [C]flavin reductase480                 
32p-cluster001447 COG0716 [C]flavodoxin426                 
33p-cluster001491 COG0731 [C]Fe-S oxidoreductase825      *         *
34p-cluster001264 COG0778 [C]nitroreductase513                 
35p-cluster003149 COG0778 [C]NAD(P)H nitroreductase756                 
36p-cluster000170 COG0822 [C]FeS cluster assembly scaffold IscU378                 
37p-cluster000295 COG1032 [C]hypothetical protein1704                 
38p-cluster000683 COG1032 [C]radical SAM protein1761                 
39p-cluster001941 COG1032 [C]methyltransferase891* * * *   *      
40p-cluster016750 COG1032 [C]hypothetical protein1704                 
41p-cluster010163 COG1038 [C]hypothetical protein1296                 
42p-cluster001644 COG1053 [C]hypothetical protein456                 
43p-cluster015173 COG1053 [C]putative L-aspartate oxidase1278                 
44p-cluster014495 COG1151 [C]hydroxylamine reductase1671                 
45p-cluster000472 COG1249 [C]CoA disulfide reductase2406    *            
46p-cluster001856 COG1249 [C]NADH oxidase1341                 
47p-cluster001990 COG1249 [C]dihydrolipoamide dehydrogenase1554                 
48p-cluster002256 COG1269 [C]ATP synthase subunit I1917                 
49p-cluster000363 COG1301 [C]sodium:proton antiporter1320                 
50p-cluster000746 COG1301 [C]sodium:dicarboxylate symporter1221                 

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Gene Completeness

>=100%
=70%
<70%

: Similar sequence present
: Not present

* : Within 300 bp from ends
F : Possible frameshift
I : Island genes