fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
Show genes only present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

1p-cluster010826 Uncategoriziedhypothetical protein2712*   * * *       * *       *                  
2p-cluster000855 COG0210 [L]ATP-dependent helicase3231    *   *         *       *                  
3p-cluster029427 COG0448 [G]glucose-1-phosphate adenylyltransfe1167                  *                          
4p-cluster040428 COG1208 [MJ]glucose-1-phosphate adenylyltransfe1155                                             
5p-cluster040429 COG0296 [G]1,4-alpha-glucan branching enzyme1842                                             
6p-cluster029430 COG0058 [G]glycogen phosphorylase2445                  *                          
7p-cluster020922 COG1640 [G]4-alpha-glucanotransferase1527    *             *                          
8p-cluster001006 Uncategoriziedhypothetical protein783* * * *           *                          
9p-cluster015623 COG0670 [R]membrane protein750                  *                          
10p-cluster001008 COG0318 [IQ]long-chain fatty acid--CoA ligase2499                  *       *                  
11p-cluster010813 Uncategoriziedhypothetical protein150                                             
12p-cluster017111 COG0037 [D]PP-loop family protein840* *   * *                                    
13p-cluster017112 COG0561 [R]Cof-like hydrolase813*     *                     *                
14p-cluster001338 COG0607 [P]sulfurtransferase864                            *                
15p-cluster001337 COG0248 [FP]phosphatase1995      *           *                          
16p-cluster001332 Uncategoriziedhypothetical protein822        *         *                          
17p-cluster017116 COG0616 [OU]signal peptide peptidase SppA, 36K 921                  *                          
18p-cluster017117 COG0566 [J]hypothetical protein382                                             
19p-cluster015634 COG0639 [T]serine/threonine protein phosphatas1302                          *                  
20p-cluster015634 COG0639 [T]serine/threonine protein phosphatas1302                          *                  
21p-cluster029444 COG4587 [R]ABC transporter798                  *                          
22p-cluster005825 COG1131 [V]multidrug ABC transporter ATP-bindi1017                  *                          
23p-cluster005826 COG3694 [R]multidrug ABC transporter permease789                                             
24p-cluster021353 COG1164 [E]oligoendopeptidase F1818                  *                          
25p-cluster001597 COG0675 [L]transposase1248  *               *                       *  
26p-cluster015927 UncategoriziedMarR family transcriptional regulat144                                             
27p-cluster000215 COG1854 [T]S-ribosylhomocysteinase480                                             
28p-cluster000216 COG2233 [F]uracil transporter1224                                             
29p-cluster000217 COG5496 [R]dihydrolipoamide acyltransferase384                  *                          
30p-cluster021357 COG1564 [H]thiamin pyrophosphokinase158                  *                          
31p-cluster040460 COG1564 [H]thiamine diphosphokinase633                  *                          
32p-cluster029451 Uncategoriziedhypothetical protein840      *           *                          
33p-cluster010792 COG0560 [E]HAD hydrolase, family IB780      *           *                          
34p-cluster000291 COG1959 [K]Rrf2 family transcriptional regulat429                  *                          
35p-cluster032148 COG1301 [C]transporter, dicarboxylate/amino ac1227  *   *           *       * *                
36p-cluster030935 Uncategoriziedserine/threonine sodium symporter102                          *                  
37p-cluster000223 COG3681 [S]membrane protein1284  *   *           *       *                  
38p-cluster030932 COG3681 [S]hypothetical protein374                          *