fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

1p-cluster001877 COG0779 [S]ribosome maturation protein RimP471* * *   *     *   *         *                
2p-cluster001876 COG0195 [K]transcription elongation factor Nus1086                                             
3p-cluster001875 COG1358 [J]ABC transporter531                                             
4p-cluster001874 COG0532 [J]translation initiation factor IF-22244                                             
5p-cluster020659 COG0858 [J]ribosome-binding factor A372                                             
6p-cluster020658 COG0608 [L]single-stranded-DNA-specific exonuc339                                             
7p-cluster046402 COG0608 [L]single-stranded-DNA-specific exonuc2559*     *           *                          
8p-cluster020657 COG0608 [L]single-stranded-DNA-specific exonuc1227                                             
9p-cluster020656 COG0544 [O]trigger factor1380                                             
10p-cluster034031 Uncategoriziedhypothetical protein123                                             
11p-cluster001870 COG0740 [OU]Clp protease582*                                            
12p-cluster004940 COG1219 [O]Clp protease ATP-binding protein1275                  *                          
13p-cluster021344 Uncategoriziedhypothetical protein144                  *                          
14p-cluster020495 Uncategoriziedhypothetical protein120                                             
15p-cluster001868 COG0466 [O]Lon protease2307                  *                          
16p-cluster001867 COG0218 [R]GTP-binding protein585                                             
17p-cluster001866 COG0060 [J]valyl-tRNA synthetase2664      *                                      
18p-cluster027807 Uncategoriziedhypothetical protein216                                             
19p-cluster001865 COG1846 [K]MarR family transcriptional regulat483                                             
20p-cluster011760 COG1174 [E]hypothetical protein1545                                             
21p-cluster008403 COG1122 [P]ABC transporter1476* *   * *         *                          
22p-cluster019244 COG0386 [O]glutathione peroxidase573                                             
23p-cluster020641 Uncategoriziedhypothetical protein492                                             
24p-cluster039643 Uncategoriziedhypothetical protein795                  *                          
25p-cluster014689 COG0237 [H]dephospho-CoA kinase582                  *                          
26p-cluster035280 COG0826 [O]protease2169  *               *                          
27p-cluster001849 COG1267 [I]phosphatidylglycerophosphatase516                                             
28p-cluster001848 COG1546 [R]damage-inducible protein CinA1209                                             
29p-cluster001847 COG1396 [K]MerR family transcriptional regulat555                                             
30p-cluster001846 COG1307 [S]hypothetical protein2538                *                         *  
31p-cluster027807 Uncategoriziedhypothetical protein216                                             
32p-cluster028576 Uncategoriziedhypothetical protein159                                             
33p-cluster034031 Uncategoriziedhypothetical protein123                                             
34p-cluster013922 Uncategoriziedhypothetical protein288                *                       * *  
35p-cluster019371 UncategoriziedRibbon-helix-helix protein, CopG fa303                * *                     *    
36p-cluster001845 COG1762 [GT]nitrogen regulatory IIA protein936  *             *                         *  
37p-cluster035387 Uncategoriziedhypothetical protein147                                             
38p-cluster000778 COG1055 [P]membrane protein1278* * * * *       *                            
39p-cluster032866 Uncategoriziedhypothetical protein180