fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
Show genes only present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

1rrna-cluster000002 Uncategorizied23S ribosomal RNA2933* * * * *   * *   * * *     *         * *   *
2p-cluster041514 Uncategoriziedhypothetical protein288                                             
3rrna-cluster000070 Uncategorizied23S ribosomal RNA1085                  *                 *        
4p-cluster023615 Uncategoriziedhypothetical protein96                                             
5rrna-cluster000062 Uncategorizied23S ribosomal RNA434              *                              
6p-cluster034726 Uncategoriziedhypothetical protein168* *   * *     *   *   * * * *           *    
7p-cluster000872 COG2220 [R]hydrolase714* * * * *       * *         *       *     *  
8p-cluster000367 COG0553 [KL]helicase SNF3270                  *                          
9p-cluster005724 COG0553 [KL]helicase SNF2700                  *                          
10p-cluster016394 Uncategoriziedhypothetical protein1794                  *                          
11p-cluster009318 Uncategoriziedhypothetical protein369                                             
12p-cluster000869 COG0587 [L]DNA polymerase III subunit alpha3402                                        *    
13p-cluster027807 Uncategoriziedhypothetical protein216                                             
14p-cluster019371 UncategoriziedRibbon-helix-helix protein, CopG fa303                * *                     *    
15p-cluster013922 Uncategoriziedhypothetical protein288                *                       * *  
16p-cluster020403 Uncategoriziedhydrogenase166                  *                          
17p-cluster018875 UncategoriziedSWIM zinc finger domain protein1458                  *                          
18p-cluster042182 Uncategoriziedhypothetical protein1914                  *                          
19p-cluster020406 Uncategoriziedhypothetical protein774                  *                          
20p-cluster005717 COG0714 [R]ATPase1101                                             
21p-cluster005716 Uncategoriziedhypothetical protein2277                                             
22p-cluster030400 UncategoriziedVWA containing CoxE family protein1191    *             *       *                  
23p-cluster005714 Uncategoriziedhypothetical protein288    *                                        
24p-cluster019756 COG3051 [C]citrate (pro-3S)-lyase1599* *                         *                
25p-cluster016199 COG2301 [G]citrate lyase912                                             
26p-cluster041097 COG3052 [C]citrate lyase acyl carrier protein309                  *                          
27p-cluster020415 Uncategoriziedhypothetical protein261                                             
28p-cluster034304 Uncategoriziedhypothetical protein90                                             
29p-cluster016378 COG1767 [H]2-(5-triphosphoribosyl)-3-dephospho852*                                            
30p-cluster024835 COG5016 [C]hypothetical protein1350                                             
31p-cluster001411 COG3493 [C]citrate-sodium symporter1377* *   * *                                    
32p-cluster000667 Uncategoriziedtranscriptional regulator798* *   * *                                    
33p-cluster018888 COG2606 [S]YbaK/EbsC protein504                  *                          
34p-cluster020420 COG0564 [J]ribosomal large subunit pseudouridi157                  *                          
35p-cluster005705 COG0564 [J]pseudouridine synthase987* *   * *         *                          
36p-cluster000973 UncategoriziedPIN family toxin-antitoxin system228                  *                          
37p-cluster020478 Uncategoriziedhypothetical protein171