fnec Gene Table Build 14_03_11 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) BL
2) DJ-1
3) BFTR-1
4) DAB
5) BFTR-2
6) DJ-2
7) D12
8) ATCC51357
9) Fnf1007
Show genes only present in
1) BL
2) DJ-1
3) BFTR-1
4) DAB
5) BFTR-2
6) DJ-2
7) D12
8) ATCC51357
9) Fnf1007
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1) BL
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6) DJ-2
7) D12
8) ATCC51357
9) Fnf1007


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium necrophorum BL

Fusobacterium necrophorum DJ-1

Fusobacterium necrophorum BFTR-1

Fusobacterium necrophorum DAB

Fusobacterium necrophorum BFTR-2

Fusobacterium necrophorum DJ-2

Fusobacterium necrophorum D12

Fusobacterium necrophorum subsp. funduliforme ATCC

Fusobacterium necrophorum subsp. funduliforme Fnf

1p-cluster005726 Uncategoriziedhypothetical protein1158            *    
2p-cluster005726 Uncategoriziedhypothetical protein1158                 
3p-cluster000653 COG0180 [J]tryptophanyl-tRNA synthetase981    *            
4p-cluster000656 COG1940 [KG]glucokinase954                 
5p-cluster000657 COG1879 [G]methyl-galactoside ABC transporter 1017                 
6p-cluster001154 COG1129 [G]sugar ABC transporter ATP-binding p1644        *        
7p-cluster009540 COG1129 [G]sugar ABC transporter ATP-binding p345        *        
8p-cluster000659 COG1172 [G]beta-methylgalactoside transporter1020                 
9p-cluster000660 COG1773 [C]rubredoxin171                 
10p-cluster014365 Uncategoriziedhypothetical protein1122                 
11p-cluster010369 Uncategoriziedhypothetical protein621                 
12p-cluster000663 Uncategoriziedhypothetical protein147                 
13p-cluster000664 COG0450 [O]alkyl hydroperoxide reductase561                 
14p-cluster000665 COG0492 [O]thioredoxin reductase1647  * *     *      
15p-cluster002562 Uncategoriziedhypothetical protein117  * *     *      
16p-cluster000666 COG0564 [J]pseudouridine synthase957                 
17p-cluster000667 COG0164 [L]ribonuclease HII630                 
18p-cluster000668 COG0792 [L]hypothetical protein372                 
19p-cluster014372 COG3478 [R]hypothetical protein225                 
20p-cluster017495 COG1040 [R]comF family protein681                 
21p-cluster000671 Uncategoriziedhypothetical protein111                 
22p-cluster002555 COG0149 [G]triosephosphate isomerase792                 
23p-cluster000673 COG0696 [G]phosphoglyceromutase1521                 
24p-cluster000674 COG1757 [C]sodium:proton antiporter1485*       *        
25p-cluster000309 COG3830 [T]hypothetical protein270*       *        
26p-cluster000310 COG2848 [S]hypothetical protein1359          *      
27p-cluster014162 COG2848 [S]hypothetical protein216          *      
28p-cluster000311 COG0012 [J]GTP-binding protein YchF1095          *      
29p-cluster000312 COG0333 [J]50S ribosomal protein L32183                 
30p-cluster000313 COG0416 [I]phosphate acyltransferase1002                 
31p-cluster000314 COG0332 [I]3-oxoacyl-ACP synthase987                 
32p-cluster000315 COG3321 [Q]malonyl CoA-ACP transacylase915                 
33p-cluster000316 COG0236 [IQ]acyl carrier protein225                 
34p-cluster000317 COG0304 [IQ]3-oxoacyl-ACP synthase1248                 
35p-cluster000318 COG0571 [K]ribonuclease III699                 
36p-cluster007103 COG0635 [H]oxygen-independent coproporphyrinog1074                 
37p-cluster000320 COG1530 [J]ribonuclease G1278                 
38p-cluster000321 COG0669 [H]phosphopantetheine adenylyltransfer498                 
39p-cluster000322 COG1066 [O]DNA repair protein RadA1383                 
40p-cluster000323 COG1623 [R]DNA integrity scanning protein DisA1050                 
41p-cluster000324 Uncategoriziedhypothetical protein399                 
42p-cluster000772 COG0621 [J]ribosomal protein S12 methylthiotra1335                 
43p-cluster000326 COG1158 [K]transcription termination factor Rh1242                 
44p-cluster014395 COG0739 [M]peptidase, M23 family1146                 
45p-cluster000328 COG0821 [I]4-hydroxy-3-methylbut-2-en-1-yl dip1062                 
46p-cluster000329 COG1595 [K]RNA polymerase sigma factor453                 
47p-cluster000330 Uncategoriziedhypothetical protein324                 
48p-cluster000331 Uncategoriziedhypothetical protein402                 
49p-cluster014400 COG0254 [J]ribosomal protein L31315                 
50p-cluster000333 COG0035 [F]uracil phosphoribosyltransferase624                 

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Gene Completeness

>=100%
=70%
<70%

: Similar sequence present
: Not present

* : Within 300 bp from ends
F : Possible frameshift
I : Island genes