fnec Gene Table Build 14_03_11 [A quick tutorial]

Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) BL
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1) BL
2) DJ-1
3) BFTR-1
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5) BFTR-2
6) DJ-2
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8) ATCC51357
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1) BL
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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium necrophorum BL

Fusobacterium necrophorum DJ-1

Fusobacterium necrophorum BFTR-1

Fusobacterium necrophorum DAB

Fusobacterium necrophorum BFTR-2

Fusobacterium necrophorum DJ-2

Fusobacterium necrophorum D12

Fusobacterium necrophorum subsp. funduliforme ATCC

Fusobacterium necrophorum subsp. funduliforme Fnf

1p-cluster000556 COG2610 [GE]citrate transporter1380* * * * * *   * *
2p-cluster000395 COG4670 [I]CoA transferase1560* *         *    
3p-cluster001988 COG1024 [I]enoyl-CoA hydratase1047                 
4p-cluster000397 COG2030 [I]enoyl-CoA hydratase456  *              
5p-cluster000398 COG2025 [C]electron transfer flavoprotein subu1038  *   * *        
6p-cluster000399 COG2086 [C]electron transfer flavoprotein subu801                 
7p-cluster000989 COG1960 [I]acyl-CoA dehydrogenase1914* * * *         *
8p-cluster000585 COG1804 [C]carnitine dehydratase1212                 
9p-cluster000556 COG2610 [GE]citrate transporter1380* * * * *     * *
10p-cluster000403 COG1024 [I]crotonase789                 
11p-cluster000230 COG2204 [T]transcriptional regulator1716  * *   *   *   *
12p-cluster011700 COG2204 [T]hypothetical protein553        *        
13p-cluster011821 COG2204 [T]hypothetical protein665        *        
14p-cluster000405 COG3051 [C]citrate lyase subunit alpha1542  *              
15p-cluster000406 COG2301 [G]citrate lyase subunit beta903                 
16p-cluster000407 COG3052 [C]citrate lyase subunit gamma285                 
17p-cluster000627 COG1883 [C]glutaconyl-CoA decarboxylase subuni1143                 
18p-cluster000628 COG4770 [I]biotin carboxyl carrier protein of 420                 
19p-cluster000410 Uncategoriziedoxaloacetate decarboxylase336                 
20p-cluster000411 COG5016 [C]oxaloacetate decarboxylase1392                 
21p-cluster011813 COG3493 [C]citrate-sodium symport1391        *        
22p-cluster000413 COG1802 [K]GntR family transcriptional regulat654        *        
23p-cluster000414 COG4574 [R]ecotin480                 
24p-cluster000415 COG3862 [S]molybdopterin oxidoreductase345    *            
25p-cluster000416 COG0446 [R]FAD-dependent pyridine nucleotide-d1317    *            
26p-cluster000417 COG0579 [R](2Fe-2S)-binding protein1434                 
27p-cluster000418 COG0554 [C]glycerol kinase1500                 
28p-cluster000419 COG0580 [G]glycerol transporter750                 
29p-cluster000424 COG3412 [S]diguanylate cyclase405                 
30p-cluster000425 COG2376 [G]diguanylate cyclase612                 
31p-cluster000426 COG2376 [G]dihydroxyacetone kinase subunit K987                 
32p-cluster000427 COG1954 [K]glycerol uptake operon antiterminat561                 
33p-cluster000428 COG1838 [C]fumarate hydratase555                 
34p-cluster000429 COG1951 [C]fumarate hydratase846  *              
35p-cluster009280 COG1448 [E]aspartate aminotransferase1284  *              
36p-cluster001311 COG2885 [M]membrane protein654              *  
37p-cluster017016 Uncategoriziedbacterial SH3 domain protein1203                 
38p-cluster000433 COG5012 [R]L-beta-lysine 5,6-aminomutase subun798    *            
39p-cluster000434 Uncategorizieddioxygenase1566                 
40p-cluster000435 COG0249 [L]methionine ABC transporter substrat1470                 
41p-cluster000436 Uncategoriziedhypothetical protein1083                 
42p-cluster000437 COG1509 [E]lysine 2,3-aminomutase1260                 
43p-cluster000438 UncategoriziedL-erythro-3,5-diaminohexanoate dehy1038                 
44p-cluster009981 COG3246 [S]3-keto-5-aminohexanoate cleavage en837                 
45p-cluster000440 Uncategorizied3-aminobutyryl-CoA ammonia lyase384  *     *        
46p-cluster000441 Uncategoriziedhypothetical protein285  *     *        
47p-cluster000442 Uncategoriziedhypothetical protein138                 
48p-cluster000443 Uncategoriziedhypothetical protein153                 
49p-cluster000788 COG0776 [L]DNA-binding protein318* *   *          
50p-cluster004560 COG1028 [IQR]L-allo-threonine dehydrogenase832  *              

Please send any comment/suggestion to kitticho@uw.edu
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Gene Completeness


: Similar sequence present
: Not present

* : Within 300 bp from ends
F : Possible frameshift
I : Island genes