hpar Gene Table Build 14_03_11 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) HPS-ST41
2) HPS-ST42
3) HPS9
4) HPS10
5) HPS11
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1) HPS-ST41
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4) HPS10
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3) HPS9
4) HPS10
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# Cluster ID COG Function Annotation Expected gene Length (bp)

Haemophilus parasuis ST4-1

Haemophilus parasuis ST4-2

Haemophilus parasuis HPS9

Haemophilus parasuis HPS10

Haemophilus parasuis HPS11

1p-cluster001683 COG3120 [S]Ter macrodomain organizer matS-bind447        *
2p-cluster001682 COG1408 [R]metallophosphoesterase1086         
3p-cluster001681 COG0753 [P]catalase1449         
4p-cluster000119 COG0187 [L]DNA gyrase subunit B2433         
5p-cluster001679 COG1666 [S]nucleotide-binding protein492         
6p-cluster001678 COG0148 [G]enolase1311         
7p-cluster001095 COG0444 [EP]microcin ABC transporter ATP-bindin1596  *      
8p-cluster001676 COG1173 [EP]peptide ABC transporter permease891         
9p-cluster001675 COG2844 [O]protein-PII uridylyltransferase2577         
10p-cluster001674 COG0556 [L]excinuclease ABC subunit B2016         
11p-cluster001673 COG2983 [S]hypothetical protein453         
12p-cluster001672 COG0393 [S]hypothetical protein321         
13p-cluster001671 COG0127 [F]nucleoside-triphosphate diphosphata594  *      
14p-cluster000670 COG1560 [M]lauroyl acyltransferase951  *      
15p-cluster001669 Uncategoriziedhypothetical protein312         
16p-cluster004346 COG1544 [J]ribosome-associated inhibitor A345    *    
17p-cluster000168 UncategoriziedDinI family protein261         
18p-cluster000169 Uncategoriziedhypothetical protein213         
19p-cluster000957 COG0564 [J]pseudouridine synthase729         
20p-cluster008260 COG0406 [G]phosphoglycerate mutase621         
21p-cluster000170 COG0017 [J]asparaginyl-tRNA synthetase1404         
22p-cluster007142 COG1629 [P]membrane protein2478         
23p-cluster000172 COG0248 [FP]exopolyphosphatase1500         
24p-cluster000173 COG2352 [C]phosphoenolpyruvate carboxylase2640         
25p-cluster000174 COG0128 [E]3-phosphoshikimate 1-carboxyvinyltr1314         
26p-cluster000175 COG1278 [K]cold-shock protein210         
27p-cluster000176 COG1225 [O]bacterioferritin comigratory protei480         
28p-cluster000177 COG0241 [E]D,D-heptose 1,7-bisphosphate phosph570         
29p-cluster000178 COG0634 [F]hypoxanthine phosphoribosyltransfer540         
30p-cluster000179 COG0741 [M]lytic murein transglycosylase2076         
31p-cluster000180 UncategoriziedABC transporter ATPase549         
32p-cluster006470 COG0053 [P]ferrous iron transporter900* *   * *
33p-cluster001320 COG3716 [G]PTS N-acetylgalactosamine transport837  *     *
34p-cluster001963 COG3715 [G]PTS fructose transporter subunit II879         
35p-cluster001962 COG3444 [G]PTS mannose transporter subunit IIA474         
36p-cluster001961 COG2222 [M]tagatose-6-phosphate ketose isomera1131         
37p-cluster001960 COG1349 [KG]transcriptional regulator762         
38p-cluster001959 COG2974 [L]recombinase RdgC918         
39p-cluster001958 COG1178 [P]iron ABC transporter permease2064         
40p-cluster001394 COG3839 [G]maltose/maltodextrin transporter AT1140         
41trna-cluster000047 UncategoriziedtRNA-Met77         
42p-cluster001956 COG0779 [S]ribosome maturation protein RimP462         
43p-cluster001955 COG0195 [K]transcription elongation factor Nus1533         
44p-cluster008004 COG0532 [J]translation initiation factor IF-22616        *
45p-cluster000883 COG0621 [J](dimethylallyl)adenosine tRNA methy1428* * *   *
46p-cluster000884 COG2190 [G]PTS system glucose-specific transpo504         
47p-cluster000885 COG0574 [G]phosphoenolpyruvate-protein phospho1722         
48p-cluster000886 COG1925 [G]PTS sugar transporter258         
49p-cluster000887 COG0136 [E]aspartate-semialdehyde dehydrogenas1116         
50p-cluster008289 UncategoriziedXRE family transcriptional regulato336         

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Gene Completeness

>=100%
=70%
<70%

: Similar sequence present
: Not present

* : Within 300 bp from ends
F : Possible frameshift
I : Island genes