fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
Show genes only present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

1p-cluster008363 Uncategoriziedhypothetical protein273        *                                    
2p-cluster018085 COG0206 [D]cell division protein FtsZ1122        *                 *                  
3p-cluster030217 COG0849 [D]cell division protein ftsA1347                                             
4p-cluster031486 UncategoriziedPOTRA domain protein, FtsQ-type723                  *                          
5p-cluster002012 COG1181 [M]D-alanine--D-alanine ligase864                  *                          
6p-cluster002013 COG0812 [M]UDP-N-acetylenolpyruvoylglucosamine846                                             
7p-cluster016435 COG0773 [M]UDP-N-acetylmuramate--alanine ligas1407                                             
8p-cluster016436 COG0707 [M]UDP-N-acetylglucosamine--N-acetylmu1080                                             
9p-cluster016437 COG0771 [M]UDP-N-acetylmuramoylalanine--D-glut1365                                             
10p-cluster002017 COG0472 [M]phospho-N-acetylmuramoyl-pentapepti1086*                                            
11p-cluster000973 UncategoriziedPIN family toxin-antitoxin system228                  *                          
12p-cluster031493 COG0770 [M]putative histidinol-phosphatase1842        *         *                          
13p-cluster033016 COG1115 [E]amino acid carrier protein1536* *   * *         *                          
14p-cluster001551 COG0102 [J]50S ribosomal protein L13435* *                                          
15p-cluster001552 COG0103 [J]30S ribosomal protein S9402                          *                  
16p-cluster001553 COG4296 [S]hypothetical protein990      *           *       *                  
17p-cluster021651 COG0598 [P]MIT family metal ion transporter Co1077                                             
18p-cluster001555 COG1954 [K]antiterminator561                  *         *                
19p-cluster020094 Uncategoriziedhypothetical protein144                  *                          
20p-cluster001556 COG1448 [E]aspartate aminotransferase1248                  *         *                
21p-cluster001433 COG2885 [M]hypothetical protein639  * * *         * *     *             *     *
22p-cluster001558 Uncategoriziedhypothetical protein1203                  *                          
23p-cluster001559 Uncategoriziedhypothetical protein339      *                   *                  
24p-cluster001560 COG3086 [T]histidine kinase456      *           *                          
25p-cluster050200 COG5295 [UW]hypothetical protein285                            *               *
26p-cluster032916 Uncategoriziedhypothetical protein1716* * * * *       * *     *               * * *
27p-cluster049267 Uncategoriziedhypothetical protein180                  *                       * *
28p-cluster003936 Uncategoriziedhypothetical protein357  *                                          
29p-cluster032916 Uncategoriziedhypothetical protein1716* * * * *       * *     *               * * *
30p-cluster049267 Uncategoriziedhypothetical protein180                  *                       * *
31