fnec Gene Table Build 14_03_11 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) BL
2) DJ-1
3) BFTR-1
4) DAB
5) BFTR-2
6) DJ-2
7) D12
8) ATCC51357
9) Fnf1007
Show genes only present in
1) BL
2) DJ-1
3) BFTR-1
4) DAB
5) BFTR-2
6) DJ-2
7) D12
8) ATCC51357
9) Fnf1007
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1) BL
2) DJ-1
3) BFTR-1
4) DAB
5) BFTR-2
6) DJ-2
7) D12
8) ATCC51357
9) Fnf1007


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium necrophorum BL

Fusobacterium necrophorum DJ-1

Fusobacterium necrophorum BFTR-1

Fusobacterium necrophorum DAB

Fusobacterium necrophorum BFTR-2

Fusobacterium necrophorum DJ-2

Fusobacterium necrophorum D12

Fusobacterium necrophorum subsp. funduliforme ATCC

Fusobacterium necrophorum subsp. funduliforme Fnf

1p-cluster000949 COG0786 [E]sodium:glutamate symporter1245  * * * *       *
2p-cluster017246 COG1924 [I]R-phenyllactate dehydratase activat834                 
3p-cluster000621 COG1775 [E]2-hydroxyglutaryl-CoA dehydratase1326                 
4p-cluster000620 COG1775 [E]2-hydroxyglutaryl-CoA dehydratase1149* * * *   *   * *
5p-cluster000619 COG3291 [R]hypothetical protein591                 
6p-cluster000618 COG0340 [H]biotin--protein ligase981                 
7p-cluster000617 COG0502 [H]biotin synthase984                 
8p-cluster000616 COG0132 [H]ATP-dependent dethiobiotin syntheta696                 
9p-cluster000615 COG0161 [H]adenosylmethionine-8-amino-7-oxonon1344                 
10p-cluster000614 Uncategoriziedferredoxin816                 
11p-cluster000613 COG0330 [O]transporter951                 
12p-cluster000612 COG2217 [P]ATPase2538                 
13p-cluster000611 COG0517 [R]hypothetical protein588                *
14p-cluster000610 COG0574 [G]pyruvate phosphate dikinase2535                 
15p-cluster000609 COG3855 [G]fructose-1,6-bisphosphatase1932                 
16p-cluster000608 COG4731 [S]hypothetical protein462                 
17p-cluster001713 COG0747 [E]diguanylate phosphodiesterase1533  * * *   *      
18p-cluster015804 COG1363 [G]M42 glutamyl aminopeptidase1089                 
19p-cluster000605 COG0500 [QR]biotin synthase663                 
20p-cluster000604 Uncategoriziedhypothetical protein597    *            
21p-cluster000603 COG0156 [H]8-amino-7-oxononanoate synthase1122    *            
22p-cluster000602 COG0010 [E]formimidoylglutamase957                 
23p-cluster000601 Uncategoriziedhypothetical protein432                 
24p-cluster000600 COG0337 [E]3-dehydroquinate synthase1980                 
25p-cluster017860 Uncategoriziedhypothetical protein348                 
26p-cluster000598 COG1295 [S]ribonuclease BN1185                 
27p-cluster000597 COG0768 [M]cell division protein FtsI1965                 
28p-cluster000596 COG1198 [L]primosomal protein2277                 
29p-cluster000595 COG0242 [J]peptide deformylase522                 
30p-cluster000594 Uncategoriziedhypothetical protein309                 
31p-cluster000593 COG1494 [G]fructose 1,6-bisphosphatase1059                 
32p-cluster000592 Uncategoriziedhypothetical protein492* * * * *        
33trna-cluster000009 UncategoriziedtRNA-Gly76  * * *       * *
34p-cluster002218 COG0457 [R]hypothetical protein1668        *        
35p-cluster002217 COG0261 [J]50S ribosomal protein L21312                 
36p-cluster002216 COG2868 [J]hypothetical protein336                 
37p-cluster002215 COG0211 [J]50S ribosomal protein L27285                 
38p-cluster002214 COG0501 [O]protease927                 
39p-cluster002213 COG0671 [I]hypothetical protein651                *
40p-cluster002696 Uncategoriziedhypothetical protein129                 
41p-cluster002212 Uncategoriziedglycine zipper417                *
42p-cluster002211 Uncategoriziedhypothetical protein177                 
43p-cluster009451 Uncategoriziedhypothetical protein204                 
44p-cluster020214 COG4824 [R]toxin secretion/phage lysis holin477*                
45p-cluster018241 Uncategoriziedhypothetical protein471                 
46p-cluster014817 Uncategoriziedhypothetical protein579                 
47p-cluster009455 Uncategoriziedhypothetical protein642                 
48p-cluster009456 Uncategoriziedhypothetical protein3480                 
49p-cluster009457 COG5283 [S]hypothetical protein4044                 
50p-cluster009458 Uncategoriziedhypothetical protein225                 

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Gene Completeness

>=100%
=70%
<70%

: Similar sequence present
: Not present

* : Within 300 bp from ends
F : Possible frameshift
I : Island genes