fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
Show genes only present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

1p-cluster022017 Uncategoriziedhypothetical protein144                  *                          
2p-cluster017111 COG0037 [D]PP-loop family protein840* *   * *                                    
3p-cluster010813 Uncategoriziedhypothetical protein150                                             
4p-cluster001008 COG0318 [IQ]long-chain fatty acid--CoA ligase2499                  *       *                  
5p-cluster015623 COG0670 [R]membrane protein750                  *                          
6p-cluster001006 Uncategoriziedhypothetical protein783* * * *           *                          
7p-cluster006309 COG3464 [L]transposase372      *                                      
8p-cluster006310 Uncategoriziedtransposase1743      * *                             *      
9p-cluster042761 Uncategoriziedhypothetical protein405                                      *      
10p-cluster003245 COG3464 [L]hypothetical protein363  *   *                 *                    
11p-cluster000879 COG0021 [G]transketolase813*                 *                          
12p-cluster038913 COG0021 [G]hypothetical protein1032                  *         *                
13p-cluster028576 Uncategoriziedhypothetical protein159                                             
14p-cluster034031 Uncategoriziedhypothetical protein123                                             
15p-cluster019186 Uncategoriziedputative TIGR01619 family protein777                  *         *                
16p-cluster000882 COG4296 [S]membrane protein894                                             
17p-cluster033443 Uncategoriziedhypothetical protein609                  *                          
18p-cluster021862 COG2256 [L]AAA family ATPase1278                  *                          
19p-cluster000885 COG0124 [J]hypothetical protein1242                  *                         *
20p-cluster000886 COG1190 [J]aspartyl-tRNA synthetase1779  *                                          
21p-cluster020940 COG0747 [E]dipeptide/oligopeptide/nickel (Ni2+1683                                             
22p-cluster000888 COG0601 [EP]ABC transporter permease978    *             *                          
23p-cluster000015 COG1173 [EP]peptide ABC transporter permease870                  *                          
24p-cluster025946 COG0444 [EP]hypothetical protein831                                             
25p-cluster028479 COG0444 [EP]peptide ABC transporter, ATP-bindin1695* *     *         *       *                  
26p-cluster000891 COG4608 [E]nickel ABC transporter ATP-binding 615                                             
27p-cluster005326 COG0614 [P]iron(III) dicitrate-binding protein1035                                             
28p-cluster014367 COG0614 [P]hypothetical protein1143                                             
29p-cluster032346 COG0609 [P]iron chelate uptake ABC transporter1059