hpar Gene Table Build 14_03_11 [A quick tutorial]

Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) HPS-ST41
2) HPS-ST42
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5) HPS11
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# Cluster ID COG Function Annotation Expected gene Length (bp)

Haemophilus parasuis ST4-1

Haemophilus parasuis ST4-2

Haemophilus parasuis HPS9

Haemophilus parasuis HPS10

Haemophilus parasuis HPS11

1p-cluster008189 COG1349 [KG]DeoR faimly transcriptional regulat759    *    
2p-cluster001350 COG2084 [I]oxidoreductase909         
3p-cluster001351 COG3395 [S]membrane protein1242         
4p-cluster001352 COG0235 [G]aldolase633         
5p-cluster001353 COG3622 [G]hypothetical protein783         
6p-cluster001354 COG0451 [MG]hypothetical protein948         
7p-cluster001355 COG2610 [GE]gluconate permease1467         
8p-cluster001356 COG4099 [R]phospholipase1347    * * *
9p-cluster000698 COG1053 [C]fumarate reductase1785        *
10p-cluster000699 COG0479 [C]fumarate reductase771         
11p-cluster006256 COG3029 [C]fumarate reductase396         
12p-cluster000701 COG3080 [C]fumarate reductase351         
13p-cluster000702 COG2981 [E]sulfate transport protein CysZ756         
14p-cluster000703 COG3115 [D]cell division protein ZipA819         
15p-cluster004115 COG0272 [L]NAD-dependent DNA ligase LigA2070         
16p-cluster000705 COG0513 [LKJ]ATP-dependent DNA helicase RecQ1830        *
17p-cluster000706 COG1965 [P]frataxin309        *
18p-cluster000707 COG1974 [KT]LexA family transcriptional regulat630         
19p-cluster003969 Uncategoriziedhypothetical protein1005         
20p-cluster004120 Uncategoriziedhypothetical protein585         
21p-cluster000710 COG0790 [R]hypothetical protein759         
22p-cluster000711 COG2937 [I]glycerol-3-phosphate acyltransferas2436         
23p-cluster000712 COG0503 [F]adenine phosphoribosyltransferase543         
24p-cluster000713 COG2812 [L]DNA polymerase III subunit gamma/ta2019         
25p-cluster000714 COG1131 [V]ABC transporter897         
26p-cluster000715 COG0842 [V]hypothetical protein756  *      
27p-cluster000716 COG2161 [D]plasmid stabilization protein255         
28p-cluster000717 COG2026 [JD]addiction module toxin RelE285         
29p-cluster000718 COG2925 [L]exonuclease I1551         
30p-cluster000719 COG1912 [S]DNA-directed RNA polymerase subunit960         
31p-cluster000720 COG3663 [L]DNA glycosylase597         
32p-cluster000721 COG0613 [R]S-adenosylmethionine tRNA ribosyltr822         
33p-cluster000722 COG0440 [E]acetolactate synthase 3 regulatory 492         
34p-cluster000723 COG0028 [EH]acetolactate synthase 3 catalytic s1722      *  
35p-cluster000724 COG0473 [CE]3-isopropylmalate dehydrogenase1083      *  
36p-cluster000725 COG0841 [V]transporter3090  *   * *
37p-cluster000726 COG0845 [M]membrane protein1206         
38p-cluster007481 COG1309 [K]TetR family transcriptional regulat567         
39p-cluster000728 COG0138 [F]phosphoribosylaminoimidazolecarboxa1599         
40p-cluster000729 COG0626 [E]cystathionine beta-lyase1191         
41p-cluster000730 COG0350 [L]cysteine methyltransferase564* * *    
42p-cluster001288 COG0050 [J]elongation factor Tu1188* * * * *
43p-cluster008786 Uncategoriziedhypothetical protein381        *
44p-cluster002040 Uncategoriziedhypothetical protein432*       *
45p-cluster001245 Uncategoriziedhypothetical protein1413* * * *  
46p-cluster001246 COG0212 [H]hypothetical protein579         
47p-cluster001247 COG3027 [S]cell division protein ZapA330         
48p-cluster001248 COG3079 [S]hypothetical protein546         
49p-cluster001249 COG1328 [F]ribonucleoside-triphosphate reducta1782         
50p-cluster001250 Uncategoriziedribonucleoside-triphosphate reducta471         

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Gene Completeness


: Similar sequence present
: Not present

* : Within 300 bp from ends
F : Possible frameshift
I : Island genes