fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
Show genes only present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

1p-cluster004264 Uncategoriziedhypothetical protein537    *                                        
2p-cluster004265 Uncategoriziedhypothetical protein315                                             
3p-cluster004266 Uncategoriziedhypothetical protein441                                             
4p-cluster014782 Uncategoriziedhypothetical protein138                                             
5p-cluster000515 COG1866 [C]phosphoenolpyruvate carboxykinase1584    *             *                          
6p-cluster000719 COG2440 [C]ferredoxin285    *                                        
7p-cluster016558 COG0644 [C]oxidoreductase FixC1347                                             
8p-cluster000717 COG2226 [H]ubiquinone biosynthesis methyltrans696                                             
9p-cluster000716 COG1575 [H]1,4-dihydroxy-2-naphthoate prenyltr924                                             
10p-cluster000715 COG0142 [H]heptaprenyl diphosphate synthase981                  *                          
11p-cluster000714 COG0247 [C](Fe-S)-binding protein2160                                             
12p-cluster000713 COG1556 [S](Fe-S)-binding protein552                                             
13p-cluster000712 COG0003 [P]arsenic ABC transporter ATPase1191  *                                          
14p-cluster000712 COG0003 [P]arsenic ABC transporter ATPase1191  *                                          
15p-cluster028859 COG0003 [P]arsenical pump-driving ATPase720                *                            
16p-cluster000710 COG0277 [C]2-hydroxy-acid oxidase1428                                             
17p-cluster002019 COG1960 [I]hypothetical protein1914                          *                  
18p-cluster029527 COG1960 [I]acyl-CoA dehydrogenase111                                             
19p-cluster029526 COG1960 [I]acyl-CoA dehydrogenase912                                             
20p-cluster000708 COG2086 [C]electron transfer flavoprotein subu780                                             
21p-cluster040382 COG2086 [C]electron transfer flavoprotein subu807                                             
22p-cluster001354 COG2025 [C]electron transfer flavoprotein subu1176                                             
23p-cluster000706 COG1380 [R]murein hydrolase384                  *                          
24p-cluster035194 COG1346 [M]membrane protein720*     * *         *       *                  
25p-cluster021804 Uncategoriziedhypothetical protein147                  *                          
26p-cluster002024 Uncategoriziedhypothetical protein1002*                                            
27p-cluster021803 Uncategoriziedhypothetical protein273                  *                          
28p-cluster001630 Uncategoriziedadhesion protein FadA390*       *                                    
29p-cluster029520 Uncategoriziedhypothetical protein393        *                                    
30p-cluster000540 Uncategoriziedhypothetical protein411        *                                    
31p-cluster024055 Uncategoriziedhypothetical protein10803* *     *                                   *
32p-cluster018191 COG0444 [EP]oligopeptide/dipeptide ABC transpor429                                        *    
33p-cluster020139 COG4608 [E]oligopeptide ABC superfamily ATP bi864    *                                   *    
34p-cluster022017 Uncategoriziedhypothetical protein144                  *                          
35p-cluster000123 COG3464 [L]transposase201*     * *               *                    
36p-cluster029141 COG3464 [L]transposase1287* * * * *   *   * *     *   *                
37p-cluster003245 COG3464 [L]hypothetical protein363