fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
Show genes only present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

1p-cluster049416 Uncategoriziedhypothetical protein77                                            *
2p-cluster000937 COG1792 [M]cell shape-determining protein MreC876                  *                         *
3p-cluster049418 Uncategoriziedhypothetical protein72                                            *
4p-cluster000405 COG0766 [M]UDP-N-acetylglucosamine 1-carboxyvi1272    *                                       *
5p-cluster000888 COG0601 [EP]ABC transporter permease978    * *           *                          
6p-cluster000015 COG1173 [EP]peptide ABC transporter permease870                  *                          
7p-cluster020029 COG1173 [EP]dipeptide ABC superfamily ATP bindi264                                             
8p-cluster031917 COG0747 [E]ABC transporter, substrate-binding 1617                                             
9p-cluster028479 COG0444 [EP]peptide ABC transporter, ATP-bindin1695* *     *         *       *                  
10p-cluster028479 COG0444 [EP]peptide ABC transporter, ATP-bindin1695* *     *         *       *                  
11p-cluster018191 COG0444 [EP]oligopeptide/dipeptide ABC transpor429                                        *    
12p-cluster024055 Uncategoriziedhypothetical protein10803* *     *                                   *
13p-cluster024055 Uncategoriziedhypothetical protein10803* *     *                                   *
14p-cluster000540 Uncategoriziedhypothetical protein411        *                                    
15p-cluster029520 Uncategoriziedhypothetical protein393        *                                    
16p-cluster001630 Uncategoriziedadhesion protein FadA390*       *                                    
17p-cluster035194 COG1346 [M]membrane protein720*     * *         *       *                  
18p-cluster000706 COG1380 [R]murein hydrolase384                  *                          
19p-cluster001354 COG2025 [C]electron transfer flavoprotein subu1176                                             
20p-cluster000708 COG2086 [C]electron transfer flavoprotein subu780                                             
21p-cluster040382 COG2086 [C]electron transfer flavoprotein subu807