fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

Keyword search
Search for
Also include clusters with significant sequence similarity
Also include clusters containing upstream and downstream genes (Must sort rows by Gene position in a genome first)

BLAST search
Sequence type

Row sorting and cell coloring options
Sort rows by Order rows in
Color cells by Display rows

Row filtering options
 Show COG of type
 Show clusters with minimum expected length of bp
Show clusters containing genes near the ends of contigs
Show clusters containing genes with frameshift mutation

Display column
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
Show genes only present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
All genomes (Core genes)
Some genomes (Variable genes)

Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


<< Prev    Next >>
First Page    Last Page
Go to page   / 108  

# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

1p-cluster018036 Uncategoriziedhypothetical protein264                                          *  
2p-cluster018035 Uncategoriziedhypothetical protein540                  *                          
3p-cluster000350 Uncategoriziedstress protein297                  *                          
4p-cluster030438 Uncategoriziedhypothetical protein1329                                             
5p-cluster034595 Uncategoriziedhypothetical protein249                                             
6p-cluster030439 COG0582 [L]integrase/recombinase1017* *               *                          
7p-cluster027052 Uncategoriziedhypothetical protein390                  *                          
8p-cluster025976 Uncategoriziedhypothetical protein204                                             
9p-cluster027053 Uncategoriziedhypothetical protein201                                             
10p-cluster034601 Uncategoriziedhypothetical protein1170                                             
11p-cluster021419 COG2849 [S]MORN repeat protein965                  *                          
12p-cluster015570 COG0697 [GER]hypothetical protein1071                                             
13p-cluster001932 COG0457 [R]hypothetical protein1821                                             
14p-cluster021416 COG0457 [R]TPR-repeat-containing protein942                                             
15p-cluster001930 COG0156 [H]8-amino-7-oxononanoate synthase1134  *   *                   *                  
16p-cluster029422 COG0156 [H]8-amino-7-oxononanoate synthase516                                             
17p-cluster001929 Uncategoriziedhypothetical protein591  *   *           *                          
18p-cluster030445 Uncategoriziedcytoplasmic protein69                          *                  
19p-cluster001928 COG0500 [QR]biotin synthase669                                             
20p-cluster010853 COG1073 [R]hypothetical protein657                                             
21p-cluster000856 COG0297 [G]glycogen synthase1386                * *                          
22p-cluster029427 COG0448 [G]glucose-1-phosphate adenylyltransfe1167                  *                          
23p-cluster040428 COG1208 [MJ]glucose-1-phosphate adenylyltransfe1155                                             
24p-cluster040429 COG0296 [G]1,4-alpha-glucan branching enzyme1842                                             
25p-cluster029430 COG0058 [G]glycogen phosphorylase2445                  *                          
26p-cluster020922 COG1640 [G]4-alpha-glucanotransferase1527    *             *                          
27p-cluster001006 Uncategoriziedhypothetical protein783* * * *           *                          
28p-cluster015623 COG0670 [R]membrane protein750                  *                          
29p-cluster001008 COG0318 [IQ]long-chain fatty acid--CoA ligase2499                  *       *                  
30p-cluster010813 Uncategoriziedhypothetical protein150                                             
31p-cluster017111 COG0037 [D]PP-loop family protein840* *   * *                                    
32p-cluster017112 COG0561 [R]Cof-like hydrolase813*     *                     *                
33p-cluster001338 COG0607 [P]sulfurtransferase864                            *                
34p-cluster001337 COG0248 [FP]phosphatase1995      *           *                          
35p-cluster001333 Uncategoriziedmembrane protein357        *                                    
36p-cluster001332 Uncategoriziedhypothetical protein822        *         *                          
37p-cluster017116 COG0616 [OU]signal peptide peptidase SppA, 36K 921                  *                          
38p-cluster027471 COG0616 [OU]protease IV1770  * * *           *       *                  
39p-cluster019432 COG0616 [OU]hypothetical protein511                *