fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
Show genes only present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

1p-cluster044664 Uncategoriziedhypothetical protein132                                        *    
2p-cluster021804 Uncategoriziedhypothetical protein147                  *                          
3p-cluster002024 Uncategoriziedhypothetical protein1002*                                            
4p-cluster021803 Uncategoriziedhypothetical protein273                  *                          
5p-cluster044666 Uncategoriziedhypothetical protein798                                             
6p-cluster021802 Uncategoriziedhypothetical protein315                  *                          
7p-cluster025061 COG1533 [L]hypothetical protein777                  *                          
8p-cluster025062 Uncategoriziedhypothetical protein1083                  *                          
9p-cluster022076 Uncategoriziedprophage minor tail protein179                  *                          
10p-cluster016740 COG0582 [L]integrase627*     *           *                          
11p-cluster020668 Uncategoriziedhypothetical protein156                  *                          
12p-cluster000337 Uncategoriziedplasmid mobilization protein2412      *           *                          
13p-cluster000336 Uncategoriziedhypothetical protein522                  *                          
14p-cluster000335 Uncategoriziedhypothetical protein300                                             
15p-cluster024364 Uncategoriziedhypothetical protein339                *                            
16p-cluster046456 Uncategoriziedhypothetical protein279                *                            
17p-cluster047278 Uncategoriziedhypothetical protein522                                             
18p-cluster019434 Uncategoriziedhypothetical protein426                *                            
19p-cluster021318 Uncategoriziedhypothetical protein222                                             
20p-cluster031929 Uncategoriziedtoxin-antitoxin system, antitoxin c231    *                                        
21p-cluster009854 COG2026 [JD]hypothetical protein297      *           *         *                
22p-cluster047275 Uncategoriziedhypothetical protein117                                             
23p-cluster000331 Uncategoriziedconjugal transfer protein TrbC321      *                                      
24p-cluster041079 COG3701 [U]conjugal transfer protein717                                             
25p-cluster000329 COG3504 [U]conjugal transfer protein TrbG837                                             
26p-cluster016745 COG2948 [U]hypothetical protein1257                  *                          
27p-cluster016748 COG3505 [U]hypothetical protein2289*                 *                          
28p-cluster022245 COG3505 [U]hypothetical protein2004                                             
29p-cluster034938 Uncategoriziedhypothetical protein315*                                            
30p-cluster023267 COG0630 [NU]P-type conjugative transfer ATPase 987*                                            
31p-cluster001649 Uncategoriziedhypothetical protein264*                                            
32p-cluster022249 COG3451 [U]VirB4 family type IV secretion/conj2739*                 *                          
33p-cluster034942 Uncategoriziedhypothetical protein183                                             
34p-cluster038812 Uncategoriziedhypothetical protein456                                             
35p-cluster001938 COG3713 [M]membrane protein738*                 *                          
36p-cluster001941 COG1961 [L]recombinase1533                  *                          
37trna-cluster000025 UncategoriziedtRNA-Arg77    *             *                          
38p-cluster001653 COG1540 [R]hypothetical protein774    *             *       *                  
39p-cluster030548 COG1540 [R]LamB/YcsF family protein276