fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
Show genes only present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

1p-cluster011541 Uncategoriziedhypothetical protein171                                             
2p-cluster002092 COG2849 [S]hypothetical protein1173*     *           *                          
3p-cluster013015 Uncategoriziedhypothetical protein1311                                             
4p-cluster000170 Uncategoriziedendonuclease951* *   * *         *                          
5p-cluster021522 Uncategoriziedhypothetical protein180                  *                          
6p-cluster035435 Uncategoriziedhypothetical protein84                                             
7p-cluster035455 COG0488 [R]ABC transporter ATP-binding protein1902                * *                          
8p-cluster032346 COG0609 [P]iron chelate uptake ABC transporter1059                                             
9p-cluster000897 COG0614 [P]iron(III) dicitrate-binding protein1053                                            *
10p-cluster019463 COG0614 [P]heme ABC superfamily ATP binding ca894                                             
11p-cluster020548 COG1629 [P]hemin receptor2276    *             *       *                 *
12p-cluster046781 COG1629 [P]iron complex outermembrane recepter1974                                             
13p-cluster000175 Uncategoriziedhypothetical protein663      *                                      
14p-cluster009019 Uncategoriziedhypothetical protein285                                             
15p-cluster002177 COG0433 [R]hypothetical protein1782                                             
16p-cluster047430 Uncategoriziedhypothetical protein1437                                             
17p-cluster000176 Uncategoriziedhypothetical protein549                                             
18p-cluster000177 COG0732 [V]restriction endonuclease subunit S1560                                             
19p-cluster000178 COG0286 [V]SAM-dependent methyltransferase1425                                             
20p-cluster000179 COG4096 [V]restriction endonuclease EcoKI subu3258                                             
21p-cluster032216 COG4096 [V]type I restriction enzyme EcoKI sub861                                             
22p-cluster017061 COG0251 [J]endoribonuclease L-PSP387* *   *                                      
23p-cluster000052 COG0210 [L]hypothetical protein2616* *   * *                                    
24p-cluster000053 Uncategoriziedhypothetical protein1932                                             
25p-cluster000054 COG2885 [M]hypothetical protein705                                             
26p-cluster000055 Uncategoriziedhypothetical protein822*                                            
27p-cluster023683 COG1724 [N]hypothetical protein630*                                            
28p-cluster034952 COG0482 [J]tRNA (5-methylaminomethyl-2-thiouri1014                  *                          
29p-cluster029391 COG1799 [S]cytoplasmic protein456                                             
30p-cluster001947 COG0325 [R]alanine racemase672      *           *                          
31p-cluster034031 Uncategoriziedhypothetical protein123                                             
32p-cluster035387 Uncategoriziedhypothetical protein147                                             
33p-cluster012477 COG0635 [H]hypothetical protein1104                  *                          
34p-cluster028698 COG0635 [H]oxygen-independent coproporphyrinog1416      *                                      
35p-cluster031197 COG1109 [G]phosphoglucomutase/phosphomannomuta1743                                             
36p-cluster021115 UncategoriziedTraT complement resistance protein768                                             
37p-cluster019162 COG3467 [R]hypothetical protein480                  *       *                 *
38p-cluster034946 Uncategoriziedhypothetical protein759