fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
Show genes only present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

1p-cluster030739 COG0860 [M]cell wall hydrolase/autolysin714                                    *     * *
2p-cluster032177 COG0813 [F]purine nucleoside phosphorylase726* * * * *         *         *                
3p-cluster001656 COG1984 [E]urea carboxylase1011                                             
4p-cluster017404 COG2049 [E]TIGR00370 family protein780                                             
5p-cluster001654 COG1914 [P]membrane protein1188                                             
6p-cluster001653 COG1540 [R]hypothetical protein774    *             *       *                  
7p-cluster030548 COG1540 [R]LamB/YcsF family protein276                                             
8trna-cluster000025 UncategoriziedtRNA-Arg77    *             *                          
9trna-cluster000010 UncategoriziedtRNA-Arg77  * * *           *                          
10trna-cluster000234 UncategoriziedtRNA-Leu88                                             
11p-cluster016173 COG0582 [L]recombinase1191                                             
12p-cluster013954 Uncategoriziedexcisionase family DNA binding doma231                                            *
13p-cluster001961 COG0330 [O]transporter828                                             
14p-cluster051220 Uncategoriziedhypothetical protein152                                            *
15p-cluster014510 Uncategoriziedhypothetical protein159                                             
16p-cluster040066 Uncategoriziedhypothetical protein261                                             
17p-cluster001963 Uncategoriziedhypothetical protein186                                             
18p-cluster046461 Uncategoriziedhypothetical protein669                *                           *
19p-cluster002222 COG1192 [D]hypothetical protein1194*                 *                         *
20p-cluster050135 Uncategoriziedhypothetical protein71                                            *
21p-cluster013948 COG4804 [S]hypothetical protein1068                  *                         *
22p-cluster001857 COG3392 [L]modification methylase1002                                            *
23p-cluster002041 Uncategoriziedhypothetical protein345                                             
24p-cluster017620 Uncategoriziedconjugal transfer protein TrbC318                                             
25p-cluster041079 COG3701 [U]conjugal transfer protein717                                             
26p-cluster016743 Uncategoriziedhypothetical protein417                                             
27p-cluster002038 Uncategoriziedhypothetical protein738                                             
28p-cluster000329 COG3504 [U]conjugal transfer protein TrbG837                                             
29p-cluster016745 COG2948 [U]hypothetical protein1257                  *                          
30p-cluster028187 COG2948 [U]conjugal transfer protein1122                                             
31p-cluster008823 Uncategoriziedhypothetical protein471                                             
32p-cluster016748 COG3505 [U]hypothetical protein2289*                 *                          
33p-cluster013937 Uncategoriziedhypothetical protein243                                             
34p-cluster023267 COG0630 [NU]P-type conjugative transfer ATPase 987*                                            
35p-cluster040083 Uncategoriziedhypothetical protein294                                             
36p-cluster022249 COG3451 [U]VirB4 family type IV secretion/conj2739*                 *                          
37p-cluster028181 COG3451 [U]conjugal transfer protein TrbE729                                             
38p-cluster016723 Uncategoriziedhypothetical protein1740                                             
39p-cluster013932 UncategoriziedP-type conjugative transfer protein846