fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
Show genes only present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

1p-cluster000473 Uncategoriziedchromosomal replication initiator p1914* * * * * *       *       *     * *          
2p-cluster000472 COG2501 [S]RNA-binding protein S4216                                *            
3p-cluster000471 COG1195 [L]recombinase RecF1110                  *             *            
4p-cluster000470 Uncategoriziedhypothetical protein273                  *                          
5p-cluster016908 COG0187 [L]DNA topoisomerase (ATP-hydrolyzing)1920                  *                          
6p-cluster032866 Uncategoriziedhypothetical protein180                                             
7p-cluster000468 COG0188 [L]DNA gyrase subunit A2436                                             
8p-cluster000467 COG0622 [R]phosphodiesterase462                                             
9p-cluster039716 COG0016 [J]phenylalanyl-tRNA synthetase alpha 1038                                             
10p-cluster000465 COG0072 [J]phenylalanyl-tRNA synthetase subuni2397                  *                          
11p-cluster019612 COG0072 [J]phenylalanyl-tRNA synthetase subuni339                  *                          
12p-cluster026639 COG2849 [S]hypothetical protein1821    * *           *         *           *    
13p-cluster026639 COG2849 [S]hypothetical protein1821    * *           *         *           *    
14p-cluster026639 COG2849 [S]hypothetical protein1821    * *           *         *           *    
15p-cluster040015 COG2849 [S]hypothetical protein312                                             
16p-cluster026639 COG2849 [S]hypothetical protein1821    * *           *         *           *    
17p-cluster029643 COG2849 [S]hypothetical protein156                                             
18p-cluster014780 Uncategoriziedhypothetical protein123                                             
19p-cluster016115 Uncategoriziedhypothetical protein120                                             
20p-cluster001050 COG1943 [L]transposase459  * * * *         *     * *         *        
21p-cluster024296 COG1943 [L]hypothetical protein195                                             
22p-cluster049525 Uncategoriziedhypothetical protein94