fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
Show genes only present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

1p-cluster035139 Uncategoriziedhypothetical protein90                              *              
2p-cluster035140 Uncategoriziedhypothetical protein384                              *              
3p-cluster043359 Uncategoriziedhypothetical protein891                                             
4p-cluster043900 Uncategoriziedhypothetical protein657                                             
5p-cluster006022 COG1132 [V]ABC transporter1758  *   * *         *                          
6p-cluster014907 COG1132 [V]ABC transporter1692                                             
7p-cluster032866 Uncategoriziedhypothetical protein180                                             
8p-cluster000186 COG0716 [C]flavodoxin510                  *                          
9p-cluster000773 COG1309 [K]TetR family transcriptional regulat471                  *                          
10p-cluster043905 Uncategoriziedhypothetical protein723                                             
11p-cluster035147 Uncategoriziedhypothetical protein234                                             
12p-cluster032031 COG1227 [C]DHHA2 domain protein1635                  *                          
13p-cluster032030 Uncategoriziedhypothetical protein462                                             
14p-cluster032029 COG0826 [O]peptidase, U32 family1233*                                            
15p-cluster000302 COG0305 [L]DNA helicase1341                                             
16p-cluster030007 COG0359 [J]50S ribosomal protein L9453                                             
17p-cluster000304 Uncategoriziedhypothetical protein831                                             
18p-cluster030009 COG0470 [L]DNA polymerase III subunits gamma/t1455                                             
19p-cluster001036 COG2204 [T]transcriptional regulator1716* *               *       *                  
20p-cluster020266 COG0810 [M]TonB protein840                                             
21p-cluster000308 COG0848 [U]biopolymer transporter ExbD444                          *                  
22p-cluster000309 COG0811 [U]biopolymer transporter ExbB612                          *                  
23p-cluster000310 Uncategoriziedhypothetical protein378  *   * *                                    
24p-cluster020927 Uncategoriziedhypothetical protein234        *                                    
25p-cluster000311 COG0457 [R]hypothetical protein2811  *     *                                    
26p-cluster000312 COG1852 [S]DNA-binding protein531                                             
27p-cluster028577 COG2202 [T]methyl-accepting chemotaxis sensory807                  *                          
28p-cluster031434 COG0745 [TK]response regulator receiver domain 702                  *                          
29p-cluster006002 COG0642 [T]histidine kinase1872*                                            
30p-cluster020047 COG1454 [C]1,3-propanediol dehydrogenase1149* *               *         *                
31p-cluster035390 Uncategoriziedhypothetical protein207                                             
32p-cluster017714 COG4816 [E]propanediol utilization protein Pdu813                                             
33p-cluster031629 Uncategoriziedhypothetical protein432                            *                
34p-cluster005999 COG4909 [Q]propanediol dehydratase1665                                             
35p-cluster035168 COG4909 [Q]propanediol dehydratase medium subu681                                             
36p-cluster020280 COG4910 [Q]propanediol dehydratase small subun537                                             
37p-cluster005996 Uncategoriziedglycerol dehydratase1815