fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
Show genes only present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

1p-cluster001555 COG1954 [K]antiterminator561                  *         *                
2p-cluster021651 COG0598 [P]MIT family metal ion transporter Co1077                                             
3p-cluster001553 COG4296 [S]hypothetical protein990      *           *       *                  
4p-cluster001552 COG0103 [J]30S ribosomal protein S9402                          *                  
5p-cluster001551 COG0102 [J]50S ribosomal protein L13435* *                                          
6p-cluster033016 COG1115 [E]amino acid carrier protein1536* *   * *         *                          
7p-cluster017093 COG0290 [J]translation initiation factor IF-3567                          *                  
8p-cluster000475 COG0291 [J]50S ribosomal protein L35207                          *                  
9p-cluster000476 COG0292 [J]hypothetical protein351                          *                  
10trna-cluster000004 UncategoriziedtRNA-Ser84* *   * *         *                          
11trna-cluster000005 UncategoriziedtRNA-Ser90  *   * *         *                          
12p-cluster000875 COG3588 [G]fructose-1,6-bisphosphate aldolase888* *   *           *       *                  
13p-cluster031004 COG0326 [O]Hsp90 protein1848* *   *           *       *                  
14p-cluster019830 COG1853 [R]flavin reductase domain protein597                *         *                  
15p-cluster001642 COG3053 [C][citrate [pro-3S]-lyase] ligase1038        *                 *                  
16p-cluster038887 COG3697 [HI]holo-ACP synthase CitX519                          *                  
17p-cluster004904 Uncategoriziedhypothetical protein912                                             
18p-cluster031009 Uncategoriziedhypothetical protein1113                                             
19p-cluster014977 Uncategoriziedtranscriptional regulator864                                          *  
20p-cluster021022 COG1262 [S]transcriptional regulator1341                                             
21p-cluster024947 Uncategoriziedhypothetical protein1155                                             
22p-cluster004900 COG1397 [O]ADP-ribosylglycohydrolase864                                             
23p-cluster033467 Uncategoriziedhypothetical protein93                                             
24p-cluster031014 COG0133 [E]tryptophan synthase, beta subunit1260                            *                
25p-cluster031015 COG3666 [L]transposase, IS4 family1476                * *         *         *      
26p-cluster019669 COG3666 [L]transposase201                  *                          
27p-cluster014464 COG3547 [L]hypothetical protein1176                  *         *                
28p-cluster031017 Uncategoriziedhypothetical protein159                            *                
29p-cluster001265 COG0053 [P]cation diffusion facilitator family1119  *               *         *                
30p-cluster047988 COG1112 [L]hypothetical protein4842                                            *
31p-cluster050588 COG1112 [L]hypothetical protein1401                                            *
32p-cluster031020 COG2099 [H]precorrin-6A reductase801        *                                    
33p-cluster001262 COG0007 [H]cobalt-precorrin-3B C(17)-methyltra750        *                                    
34p-cluster031022 COG2073 [H]CbiG1014                                             
35p-cluster001260 Uncategoriziedhypothetical protein732                *                            
36p-cluster006244 COG4277 [R]radical SAM protein1251        *       * *                          
37p-cluster031025 Uncategoriziedhypothetical protein534