fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
Show genes only present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

1p-cluster008782 UncategoriziedUbiD family decarboxylase4476                  *       *                  
2p-cluster000790 COG1418 [R]ribonuclease1566                                             
3p-cluster041913 COG1366 [T]STAS domain protein423                                             
4p-cluster000788 COG3920 [T]anti-sigma B factor411                                             
5p-cluster020815 Uncategoriziedhypothetical protein423                  *                          
6p-cluster000786 COG0324 [J]tRNA dimethylallyltransferase912                  *                          
7p-cluster020816 COG0324 [J]tRNA delta(2)-isopentenylpyrophosph262                  *                          
8p-cluster000785 COG0012 [J]GTPase CgtA1287                  *                       *  
9p-cluster028802 COG0500 [QR]methyltransferase300                                             
10p-cluster047897 COG0500 [QR]hypothetical protein894        *         *                          
11p-cluster028803 COG0500 [QR]methyltransferase402                                             
12p-cluster001358 COG0482 [J]thiouridylase1089                  *                          
13p-cluster021901 COG0482 [J]tRNA (5-methylaminomethyl-2-thiouri285                  *                          
14p-cluster029182 COG0340 [H]biotin operon repressor708                  *                     *    
15p-cluster000778 COG1055 [P]membrane protein1278* * * * *       *                            
16p-cluster000778 COG1055 [P]membrane protein1278* * * * *       *                            
17p-cluster001845 COG1762 [GT]nitrogen regulatory IIA protein936  *             *                         *  
18p-cluster001846 COG1307 [S]hypothetical protein2538                *                         *  
19p-cluster001847 COG1396 [K]MerR family transcriptional regulat555                                             
20p-cluster001848 COG1546 [R]damage-inducible protein CinA1209                                             
21p-cluster001849 COG1267 [I]phosphatidylglycerophosphatase516                                             
22p-cluster035280 COG0826 [O]protease2169  *               *                          
23p-cluster014689 COG0237 [H]dephospho-CoA kinase582                  *                          
24p-cluster032791 Uncategoriziedhypothetical protein1095  *               *                          
25p-cluster029193 Uncategoriziedhypothetical protein774                                             
26p-cluster039643 Uncategoriziedhypothetical protein795                  *                          
27p-cluster020641 Uncategoriziedhypothetical protein492                                             
28p-cluster032791 Uncategoriziedhypothetical protein1095  *               *                          
29p-cluster029197 COG0534 [V]Na+ driven multidrug efflux pump1371* *   *                                      
30p-cluster032793 COG0542 [O]ATP-dependent chaperone protein Clp2595* *   * *         *                          
31p-cluster016689 Uncategoriziedhypothetical protein150                                             
32p-cluster020091 COG2964 [S]hypothetical protein704                  *                          
33p-cluster002032 COG3033 [E]tryptophanase1638* *   *           *                          
34p-cluster002033 COG0733 [R]sodium-dependent tryptophan transpo1335* *                         *       *     * *
35p-cluster034726 Uncategoriziedhypothetical protein168* *   * *     *   *   * *   *           *    
36rrna-cluster000002 Uncategorizied23S ribosomal RNA2933* * * * *   * *