fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
Show genes only present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

1p-cluster010067 Uncategoriziedhypothetical protein405                        *                    
2p-cluster010066 Uncategoriziedhypothetical protein543                                             
3p-cluster021236 COG3210 [U]hypothetical protein1245  *   * *         *                       *  
4p-cluster010620 Uncategoriziedhypothetical protein357                                             
5p-cluster016090 Uncategoriziedhypothetical protein141                                             
6p-cluster021234 Uncategoriziedhypothetical protein939* *   *           *                          
7p-cluster017827 Uncategoriziedhypothetical protein201                                             
8p-cluster021393 Uncategoriziedhypothetical protein696                  *                          
9p-cluster026536 Uncategoriziedhypothetical protein447                                             
10p-cluster034324 Uncategoriziedhypothetical protein273                                             
11p-cluster026537 Uncategoriziedhypothetical protein348                                             
12p-cluster035147 Uncategoriziedhypothetical protein234                                             
13p-cluster022071 Uncategoriziedhypothetical protein611        *         *                          
14p-cluster026539 Uncategoriziedhypothetical protein429* *     *                                    
15p-cluster004199 Uncategoriziedtestis-expressed sequence 9 protein399* *               *                          
16p-cluster001603 Uncategoriziedhypothetical protein315                                             
17p-cluster026542 COG3210 [U]hemolysin240        *                                    
18p-cluster010619 Uncategoriziedhypothetical protein390                                          *  
19p-cluster023473 Uncategoriziedhypothetical protein261                                             
20p-cluster010623 Uncategoriziedhypothetical protein201                                             
21p-cluster010624 Uncategoriziedhypothetical protein207        *                                    
22p-cluster008503 Uncategoriziedhypothetical protein807        *         *                          
23p-cluster010626 Uncategoriziedhypothetical protein450        *         *                          
24p-cluster000851 Uncategoriziedhypothetical protein312* *   *           *                          
25p-cluster019403 COG3210 [U]hypothetical protein336* *             * *                          
26p-cluster026549 Uncategoriziedhypothetical protein267*                                            
27p-cluster010633 Uncategoriziedhypothetical protein495*                 *                          
28p-cluster027286 Uncategoriziedhypothetical protein492  *   * *       *                            
29p-cluster022148 Uncategoriziedhypothetical protein138                  *                          
30p-cluster029328 COG0323 [L]DNA mismatch repair protein mutL2028      *                                      
31p-cluster002077 COG1576 [S]50S rRNA methyltransferase468                  *                          
32p-cluster002076 Uncategoriziedhypothetical protein408                  *                          
33p-cluster034800 Uncategoriziedhypothetical protein1278                  *                          
34p-cluster002074 COG1190 [J]lysyl-tRNA synthetase1482                * *                          
35p-cluster020495 Uncategoriziedhypothetical protein120                                             
36p-cluster021141 COG1380 [R]murein hydrolase exporter369                  *                          
37p-cluster035194 COG1346 [M]membrane protein720*     * *         *       *                  
38p-cluster002036 COG2978 [H]ABC transporter permease1545    *                     *                  
39p-cluster021054 COG0716 [C]flavodoxin529        *         *         *                
40p-cluster008454 COG1309 [K]TetR family transcriptional regulat573