fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
Show genes only present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

1p-cluster028431 COG3464 [L]transposase383  *                     *   *                
2p-cluster028962 COG0563 [F]DNA topology modulation protein FLA507                  *   *                      
3p-cluster042019 Uncategoriziedhypothetical protein126                *                            
4p-cluster047895 COG1811 [R]hypothetical protein723    *           * *                          
5p-cluster026429 Uncategoriziedhypothetical protein555    *             *                          
6p-cluster030103 COG3177 [S]hypothetical protein1284*                 *                          
7p-cluster004517 Uncategoriziedhypothetical protein255                                             
8p-cluster011927 COG4115 [S]txe/YoeB family addiction module to321    *             *                          
9p-cluster013904 Uncategoriziedhypothetical protein123                                             
10p-cluster000120 COG1197 [LK]transcription-repair coupling facto2946  *   *           *                          
11p-cluster021681 COG1197 [LK]transcription-repair coupling facto140                  *                          
12p-cluster028576 Uncategoriziedhypothetical protein159                                             
13p-cluster034031 Uncategoriziedhypothetical protein123                                             
14p-cluster000119 COG1188 [J]heat-shock protein Hsp15300  *   *           *       *                  
15p-cluster000118 COG1947 [I]4-diphosphocytidyl-2C-methyl-D-eryt885                  *                          
16p-cluster030106 COG1947 [I]4-diphosphocytidyl-2-C-methyl-D-ery138                          *                  
17p-cluster039744 COG2088 [M]hypothetical protein288                          *                  
18p-cluster000123 COG3464 [L]transposase201*     * *               *                    
19p-cluster029141 COG3464 [L]transposase1287* * * * *   *   * *     *   *                
20p-cluster003245 COG3464 [L]hypothetical protein363  *   *                 *                    
21p-cluster006309 COG3464 [L]transposase372      *                                      
22p-cluster028431 COG3464 [L]transposase383  *                     *   *                
23p-cluster018246 COG1288 [S]C4-dicarboxylate anaerobic carrier1581* *   *           *       *                 *
24p-cluster049899 COG1288 [S]hypothetical protein326                                            *
25p-cluster019301 Uncategoriziedtoxin-antitoxin system, toxin compo213                                             
26p-cluster023683 COG1724 [N]hypothetical protein630*                                            
27p-cluster044354 COG1598 [S]hypothetical protein405                                             
28p-cluster000113 COG0716 [C]flavodoxin432                  *                          
29p-cluster010178 COG1757 [C]sodium:proton antiporter1461  *   * *         *       *                 *
30p-cluster000111 COG0503 [F]adenine phosphoribosyltransferase534                                             
31p-cluster000110 COG2252 [R]guanine permease1068                                             
32p-cluster004956 Uncategoriziedhypothetical protein237                                             
33p-cluster001238 COG1492 [H]cobalamin biosynthesis protein CobQ1491* * * * *                 *             *   *
34p-cluster019564 COG1492 [H]adenosylcobyric acid synthase387                  *                          
35p-cluster016943 COG1492 [H]hypothetical protein120                                             
36p-cluster035121 COG1115 [E]sodium:alanine symporter1416                  *