fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
Show genes only present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

1p-cluster041057 COG0550 [L]DNA topoisomerase2412*                   *                        
2p-cluster024388 COG2003 [L]hypothetical protein2778*                 *                     *    
3p-cluster022214 Uncategoriziedhypothetical protein414                                             
4p-cluster022215 Uncategoriziedhypothetical protein624                                             
5p-cluster022216 Uncategoriziedhypothetical protein204                                             
6p-cluster000669 Uncategoriziedconjugal transfer protein TrbJ795                                             
7p-cluster020681 Uncategoriziedhypothetical protein321                                             
8p-cluster047299 COG3846 [U]P-type conjugative transfer protein1731                                             
9p-cluster000672 Uncategoriziedhypothetical protein540      *                                      
10p-cluster043672 Uncategoriziedhypothetical protein201                                             
11p-cluster020677 Uncategoriziedhypothetical protein327*     *                                      
12p-cluster024378 Uncategoriziedhypothetical protein267*                 *                          
13p-cluster002223 Uncategoriziedzeta-toxin1104*                 *                          
14p-cluster002223 Uncategoriziedzeta-toxin1104*                 *                          
15p-cluster034912 Uncategoriziedhypothetical protein162                                             
16p-cluster002222 COG1192 [D]hypothetical protein1194*                 *                         *
17p-cluster002026 Uncategoriziedhypothetical protein327                                             
18p-cluster002025 Uncategoriziedhypothetical protein672*                                       *    
19p-cluster034915 Uncategoriziedhypothetical protein93                                             
20p-cluster034915 Uncategoriziedhypothetical protein93                                             
21p-cluster002024 Uncategoriziedhypothetical protein1002*                                            
22p-cluster002218 Uncategoriziedhypothetical protein393*                                            
23p-cluster034918 Uncategoriziedhypothetical protein96                                             
24p-cluster022232 Uncategoriziedhypothetical protein213                                             
25p-cluster024373 Uncategoriziedhypothetical protein225                                             
26p-cluster022234 Uncategoriziedhypothetical protein900                                             
27p-cluster022235 Uncategoriziedhypothetical protein876                                             
28p-cluster016740 COG0582 [L]integrase627*     *           *                          
29p-cluster020668 Uncategoriziedhypothetical protein156                  *                          
30p-cluster000335 Uncategoriziedhypothetical protein300                                             
31p-cluster041355 Uncategoriziedhypothetical protein300                *                            
32p-cluster021318 Uncategoriziedhypothetical protein222                                             
33p-cluster031929 Uncategoriziedtoxin-antitoxin system, antitoxin c231    *                                        
34p-cluster009854 COG2026 [JD]hypothetical protein297      *           *         *                
35p-cluster047275 Uncategoriziedhypothetical protein117                                             
36p-cluster000331 Uncategoriziedconjugal transfer protein TrbC321      *                                      
37p-cluster041079 COG3701 [U]conjugal transfer protein717                                             
38p-cluster000329 COG3504 [U]conjugal transfer protein TrbG837                                             
39p-cluster016745 COG2948 [U]hypothetical protein1257