fnuc Gene Table Build 14_03_12 [A quick tutorial]

Citation
Kittichotirat W, Bumgarner RE, Asikainen S, Chen C, 2011
Identification of the Pangenome and Its Components in 14 Distinct Aggregatibacter actinomycetemcomitans Strains by Comparative Genomic Analysis
PLoS ONE 6(7): e22420. doi:10.1371/journal.pone.0022420

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1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
Show genes only present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7
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Some genomes (Variable genes)

Show genes not present in
1) YH7053
2) YH7054
3) YH7055
4) YH7056
5) YH7199
6) animalis-4_8
7) animalis-3_1_33
8) animalis-7_1
9) animalis-D11
10) animalis-ATCC51191
11) animalis-F0419
12) animalis-21_1A
13) animalis-11_3_2
14) fusiforme-ATCC51190
15) nucleatum-ATCC23726
16) polymorphum-ATCC10953
17) polymorphum-F0401
18) vincentii-3_1_36A2
19) vincentii-4_1_13
20) 13_3C
21) CTI-5
22) CTI-6
23) CTI-7


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# Cluster ID COG Function Annotation Expected gene Length (bp)

Fusobacterium nucleatum YH7053

Fusobacterium nucleatum YH7054

Fusobacterium nucleatum YH7055

Fusobacterium nucleatum YH7056

Fusobacterium nucleatum YH7199

Fusobacterium nucleatum subsp. animalis 4_8

Fusobacterium nucleatum subsp. animalis 3_1_33

Fusobacterium nucleatum subsp. animalis 7_1

Fusobacterium nucleatum subsp. animalis D11

Fusobacterium nucleatum subsp. animalis ATCC 51191

Fusobacterium nucleatum subsp. animalis F0419

Fusobacterium nucleatum subsp. animalis 21_1A

Fusobacterium nucleatum subsp. animalis 11_3_2

Fusobacterium nucleatum subsp. fusiforme ATCC 5119

Fusobacterium nucleatum subsp. nucleatum ATCC 2372

Fusobacterium nucleatum subsp. polymorphum ATCC 10

Fusobacterium nucleatum subsp. polymorphum F0401

Fusobacterium nucleatum subsp. vincentii 3_1_36A2

Fusobacterium nucleatum subsp. vincentii 4_1_13

Fusobacterium nucleatum 13_3C

Fusobacterium nucleatum CTI-5

Fusobacterium nucleatum CTI-6

Fusobacterium nucleatum CTI-7

1p-cluster000009 COG1032 [C]methyltransferase894                  *                          
2p-cluster000010 COG0726 [G]polysaccharide deacetylase1803                  *                          
3p-cluster000012 COG0697 [GER]membrane protein864                  *                          
4p-cluster000015 COG1173 [EP]peptide ABC transporter permease870                  *                          
5p-cluster000020 COG0860 [M]N-acetylmuramoyl-L-alanine amidase1029                                             
6p-cluster000021 Uncategoriziedhypothetical protein447                                             
7p-cluster000023 COG2890 [J]SAM-dependent methyltransferase1152                                             
8p-cluster000025 COG0742 [L]methyltransferase549                  *                          
9p-cluster000026 COG1722 [L]exodeoxyribonuclease VII small subu213                                             
10p-cluster000028 COG0020 [I]UDP pyrophosphate synthase693                  *                          
11p-cluster000032 Uncategoriziedhypothetical protein549                                             
12p-cluster000033 Uncategoriziedhypothetical protein738                                      *      
13p-cluster000034 UncategoriziedCopG family transcriptional regulat315                    *                 *      
14p-cluster000035 Uncategoriziedhypothetical protein246                                *     * *    
15p-cluster000036 Uncategoriziedhypothetical protein396*                                            
16p-cluster000039 COG0624 [E]peptidase M201359                          *                  
17p-cluster000041 Uncategoriziedserine/threonine protein kinase1284                                             
18p-cluster000043 COG4752 [S]hypothetical protein564    *                                       *
19p-cluster000044 COG0336 [J]tRNA (guanine-N1)-methyltransferase717                                            *
20p-cluster000048 COG0030 [J]16S rRNA methyltransferase795                  *                          
21p-cluster000049 COG0634 [F]hypoxanthine phosphoribosyltransfer528* *               *                          
22p-cluster000051 Uncategorizieddiacylglyceryl transferase780*       *                                    
23p-cluster000052 COG0210 [L]hypothetical protein2616* *   * *                                    
24p-cluster000053 Uncategoriziedhypothetical protein1932                                             
25p-cluster000054 COG2885 [M]hypothetical protein705                                             
26p-cluster000055 Uncategoriziedhypothetical protein822*                                            
27p-cluster000057 COG0454 [KR]acetyltransferase483                                             
28p-cluster000058 Uncategoriziedhypothetical protein456  * *             *         *                
29p-cluster000059 COG4399 [S]membrane protein603  * *             *       *                  
30p-cluster000061 COG1959 [K]Rrf2 family transcriptional regulat432                                             
31p-cluster000062 COG1385 [S]hypothetical protein708                                             
32p-cluster000063 COG0621 [J]Fe-S oxidoreductase1308                  *                          
33p-cluster000064 Uncategoriziedhypothetical protein984                  *                          
34p-cluster000065 Uncategoriziedhypothetical protein423                  *                          
35p-cluster000068 COG1534 [J]RNA-binding protein300                                             
36p-cluster000069 COG1154 [HI]1-deoxy-D-xylulose-5-phosphate synt1803                                             
37p-cluster000070